{"id":"W4413376733","doi":"10.1093/clinchem/hvaf093","title":"Interdisciplinary Collaboration to Develop a Custom Genomic Analysis Pipeline for the Clinical Laboratory: Hepatitis B Virus and Cytomegalovirus Antiviral Resistance Genotyping","year":2025,"lang":"en","type":"article","venue":"Clinical Chemistry","topic":"Hepatitis B Virus Studies","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"St. Paul's Hospital; University of British Columbia","funders":"","keywords":"Genotyping; Hepatitis B virus; Virology; Genotype; DNA sequencing; Biology; Virus; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02894424,0.002003258,0.001469288,0.002769118,0.001379213,0.003502393,0.002538804,0.001346196,0.02398436],"category_scores_gemma":[0.02014784,0.001101864,0.001661728,0.001700832,0.0009207586,0.002265587,0.008063117,0.002823524,0.01688327],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001999938,"about_ca_system_score_gemma":0.01045373,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002690977,"about_ca_topic_score_gemma":0.002623126,"domain_scores_codex":[0.9879007,0.004865333,0.000996603,0.002948272,0.002174645,0.001114364],"domain_scores_gemma":[0.9749977,0.004875488,0.001691707,0.005210053,0.008807062,0.004417951],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002477912,0.0008972702,0.02202996,0.001683339,0.0006791841,0.001821681,0.004628033,0.00876745,0.1288193,0.006399495,0.09287907,0.7289172],"study_design_scores_gemma":[0.0009778334,0.001927348,0.02950266,0.001251905,0.0005359884,0.003164421,0.001869098,0.05101049,0.1099658,0.01951765,0.7798241,0.0004527253],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.03068194,0.001436259,0.9085864,0.004463166,0.0008910563,0.003921456,0.004234805,0.03430342,0.01148138],"genre_scores_gemma":[0.09372982,0.0006490191,0.8766787,0.003094417,0.0003496292,0.003221087,0.007944288,0.004747502,0.009585503],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.02894424,"threshold_uncertainty_score":0.1530736,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03245564167954362,"score_gpt":0.3998465626101189,"score_spread":0.3673909209305753,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}