{"id":"W4413384086","doi":"10.1101/2025.08.20.671223","title":"Genomic Evidence for a-α Heterothallic and α-α Unisexual Mating and Recombination in an Environmental <i>Cryptococcus deneoformans</i> Population","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Yeasts and Rust Fungi Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Biology; Heterothallic; Mating type; Genetics; Genome; Population; Mitochondrial DNA; Recombination; Single-nucleotide polymorphism; Locus (genetics); Sexual reproduction; Evolutionary biology; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003033874,0.0002621966,0.0002375307,0.0001008695,0.0001363291,0.00008351239,0.0001318051,0.0002819458,0.00000183147],"category_scores_gemma":[0.00005659567,0.0002857265,0.00003578735,0.0000451343,0.00005261087,0.0000190083,0.0003937068,0.0001439821,5.250357e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007721938,"about_ca_system_score_gemma":0.00005512876,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003699168,"about_ca_topic_score_gemma":0.00002354794,"domain_scores_codex":[0.998692,0.0000628786,0.0002956816,0.0006303701,0.00008068114,0.0002383442],"domain_scores_gemma":[0.9993828,0.0000245778,0.0001648203,0.0003195333,0.00003797637,0.00007031787],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005924838,0.00004814582,0.2189238,0.0003390892,0.00004031152,0.000001168698,0.00001570777,0.00008531281,0.7803528,0.00006572129,0.00001265731,0.00005605411],"study_design_scores_gemma":[0.0007626696,0.0002304525,0.9411057,0.000382152,0.00006633539,3.407012e-8,0.00001369533,0.001393905,0.05504356,0.000008716303,0.0004552685,0.0005375733],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951332,0.003008415,0.0005738012,0.00004750941,0.000202791,0.0008737661,0.0001399692,0.00001939128,0.000001111678],"genre_scores_gemma":[0.9958798,0.001364405,0.002260414,0.0000739889,0.0001291847,0.000251914,0.000005658916,0.00002909602,0.000005571727],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7253092,"threshold_uncertainty_score":0.9999595,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01931386329620371,"score_gpt":0.2556508885159565,"score_spread":0.2363370252197527,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}