{"id":"W4413385158","doi":"10.3168/jds.2025-26872","title":"Early-life shedding and environmental presence of Mycobacterium avium ssp. paratuberculosis in Chilean dairy calves","year":2025,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Fondo de Innovación para la Competitividad; Agencia Nacional de Investigación y Desarrollo; Fondo Nacional de Desarrollo Científico y Tecnológico; Universidad Austral de Chile; Google","keywords":"Paratuberculosis; Mycobacterium avium subsp. paratuberculosis; Biology; Mycobacterium; Mycobacterium avium subspecies paratuberculosis; Veterinary medicine; Microbiology; Bacteria; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006990064,0.0002461953,0.0002491565,0.0005541634,0.0002463399,0.0006359845,0.0003919594,0.0002973427,0.0008013914],"category_scores_gemma":[0.001667147,0.0002262309,0.0001864455,0.000325215,0.0003545401,0.000340351,0.0005247676,0.0003382786,0.0001265256],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008450622,"about_ca_system_score_gemma":0.0005199218,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02025569,"about_ca_topic_score_gemma":0.02163344,"domain_scores_codex":[0.9996201,0.0001033254,0.00002667172,0.00009714304,0.00006852547,0.00008417731],"domain_scores_gemma":[0.9989427,0.0003181576,0.0004322485,0.00004318408,0.0001360682,0.000127567],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005566897,0.00002243726,0.9956396,0.00002060167,0.00002095385,0.0001909229,0.0002306383,0.0001095581,0.001861685,0.00001210343,0.00002341324,0.001812492],"study_design_scores_gemma":[0.000001432141,0.00005394696,0.9989371,0.00001170625,0.000006649111,0.0001427838,0.0003752165,0.0001988906,0.0001823903,0.00001230399,0.00007496319,0.000002589326],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996358,0.0001201867,0.00006193615,0.000009758511,4.347193e-7,0.000002144029,0.00007924136,0.000001209726,0.00008910593],"genre_scores_gemma":[0.9995653,0.0001041013,0.00009135763,0.000007969869,0.000001172816,0.000004237504,0.0001101835,6.735582e-7,0.0001149525],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02025569,"threshold_uncertainty_score":0.04027557,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01179820663618143,"score_gpt":0.2846038059769685,"score_spread":0.2728055993407871,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}