{"id":"W4413392243","doi":"10.32942/x2b65p","title":"Sydney Phylogenetics Workshop: Lessons from the past 15 years","year":2025,"lang":"en","type":"preprint","venue":"","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of Sydney; McMaster University","keywords":"Phylogenetics; History; Geography; Biology; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01736853,0.001114331,0.0005910731,0.001284432,0.004202164,0.007681375,0.003725751,0.004517405,0.02502485],"category_scores_gemma":[0.01539518,0.0006606977,0.001141335,0.001099745,0.003352894,0.00766848,0.01226722,0.006826551,0.01288333],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005127724,"about_ca_system_score_gemma":0.01181628,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01013474,"about_ca_topic_score_gemma":0.02056134,"domain_scores_codex":[0.994853,0.002316219,0.0002123118,0.0004518937,0.001236768,0.0009299319],"domain_scores_gemma":[0.9818916,0.002078836,0.0005347544,0.0008053313,0.003299099,0.01139038],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000871961,0.0001492473,0.0005337733,0.0005184131,0.00001567804,0.0006734052,0.005474996,0.0005027614,0.0004110533,0.01206606,0.8488592,0.1307082],"study_design_scores_gemma":[0.000007442145,0.00003272081,0.0006917387,0.0006003354,0.000002693213,0.0002005347,0.002883292,0.00008126292,0.0001119669,0.00357364,0.9917943,0.00002005309],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.01603376,0.06915371,0.01064113,0.5951325,0.1845384,0.0002409225,0.0009399476,0.00101618,0.1223035],"genre_scores_gemma":[0.1320667,0.09424186,0.04160101,0.1578937,0.05021396,0.000652213,0.004087258,0.00218083,0.5170624],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.02502485,"threshold_uncertainty_score":0.09185463,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02389787562678007,"score_gpt":0.2767602965803351,"score_spread":0.252862420953555,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}