{"id":"W4413395833","doi":"10.3390/v17081148","title":"“Big Events” and HIV Transmission Dynamics: Estimating Time Since HIV Infection from Deep Sequencing Data Among Sex Workers and Their Clients in Dnipro, Ukraine","year":2025,"lang":"en","type":"article","venue":"Viruses","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; St. Michael's Hospital; Manitoba Health; University of Manitoba; Public Health Agency of Canada","funders":"Canadian Institutes of Health Research","keywords":"Demography; Transmission (telecommunications); Human immunodeficiency virus (HIV); Sex work; Genotyping; Men who have sex with men; Sex workers; Viral load; Medicine; HIV drug resistance; Geopolitics; Virology; Environmental health; Biology; Population; Genotype; Antiretroviral therapy; Political science; Genetics; Sociology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001164827,0.0002598733,0.0003200663,0.0008282473,0.0005630938,0.0007717744,0.0004762153,0.0003070435,0.0004329651],"category_scores_gemma":[0.002320705,0.0002350126,0.0003185658,0.0008424247,0.0003274382,0.0003869376,0.001280652,0.0005061072,0.0001327897],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007840586,"about_ca_system_score_gemma":0.001044173,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04489171,"about_ca_topic_score_gemma":0.06444397,"domain_scores_codex":[0.9994227,0.0002025594,0.00005408041,0.0001520472,0.00006284755,0.0001058062],"domain_scores_gemma":[0.9989552,0.0002768887,0.0004329532,0.00009105527,0.0001338735,0.000109975],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003428738,0.00001418943,0.9924148,0.00002559888,0.00005723161,0.00007569488,0.0006992411,0.0009025118,0.0003782708,0.00006051675,0.0001802348,0.005157535],"study_design_scores_gemma":[0.000003311101,0.00004264644,0.9890702,0.00006502291,0.00004525253,0.0002384319,0.002601235,0.006090158,0.0004688888,0.0002028151,0.00115973,0.00001229558],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977769,0.0002279032,0.0005423884,0.00005887562,0.000002560784,0.000008456202,0.001172541,0.000008667358,0.0002016568],"genre_scores_gemma":[0.9971256,0.0001496564,0.0009679252,0.00004004396,0.000003559714,0.0000208391,0.001549272,0.000004786174,0.000138335],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04489171,"threshold_uncertainty_score":0.08926082,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02411093127835194,"score_gpt":0.280025704341837,"score_spread":0.255914773063485,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}