{"id":"W4413477251","doi":"10.1007/978-3-031-84869-8_24","title":"A Multiscale Model for Protein Allostery: Side Chain Concerted Motions Initiated by Brownian Kicks","year":2025,"lang":"en","type":"book-chapter","venue":"Springer proceedings in mathematics & statistics","topic":"Protein Structure and Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Waterloo","funders":"","keywords":"Brownian motion; Statistical physics; Allosteric regulation; Brownian dynamics; Physics; Nuclear magnetic resonance; Quantum mechanics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002605351,0.0006543837,0.000676991,0.0001869106,0.0001242048,0.00009719811,0.0004527853,0.0008396392,0.00001231407],"category_scores_gemma":[0.0004709331,0.0007063907,0.0001446525,0.00005298295,0.0001904831,0.00001005832,0.0002831259,0.0004725873,0.000004511409],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001060433,"about_ca_system_score_gemma":0.0002420282,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008926385,"about_ca_topic_score_gemma":0.00008083869,"domain_scores_codex":[0.9975688,0.00000636965,0.0008707299,0.0007504622,0.0002931396,0.000510477],"domain_scores_gemma":[0.998468,0.00003683009,0.0005285614,0.0003534135,0.0004849902,0.0001282024],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.000263611,0.0004446715,0.00003052023,0.008677957,0.0009149119,0.00002641662,0.001840648,0.0002653311,0.2198014,0.7297879,0.03026309,0.007683596],"study_design_scores_gemma":[0.002743886,0.0004625214,0.000006887625,0.002253439,0.0004091105,0.00001890274,0.0001141402,0.4237461,0.009737534,0.5329592,0.02537607,0.002172192],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.001163778,0.0005503065,0.9231753,0.0001281857,0.0001560024,0.004672284,0.007397426,0.0001003698,0.06265636],"genre_scores_gemma":[0.01538857,0.0003171151,0.6446023,0.0003210708,0.0002013322,0.0008503275,0.00254736,0.0003171258,0.3354548],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.4234808,"threshold_uncertainty_score":0.9995387,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01837036575759621,"score_gpt":0.261616751304637,"score_spread":0.2432463855470408,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}