{"id":"W4413488416","doi":"10.3389/fmicb.2025.1595810","title":"Structure and function of the topsoil microbiome in Chinese terrestrial ecosystems","year":2025,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Stantec (Canada)","funders":"Youth Innovation Promotion Association of the Chinese Academy of Sciences; Youth Innovation Promotion Association; Chinese Academy of Sciences; National Natural Science Foundation of China","keywords":"Microbiome; Function (biology); Ecosystem; Topsoil; Terrestrial ecosystem; Biology; Metagenomics; Ecology; Computational biology; Environmental science; Evolutionary biology; Genetics; Gene; Soil water","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000146487,0.0002429244,0.0002753773,0.00145052,0.0005462226,0.0003578328,0.0001144539,0.0001989739,0.0004606825],"category_scores_gemma":[0.0001776455,0.0001235981,0.0002338369,0.001505144,0.000261912,0.0002254866,0.000474301,0.00008660364,0.00006081711],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004413454,"about_ca_system_score_gemma":0.0006233322,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01693045,"about_ca_topic_score_gemma":0.02147533,"domain_scores_codex":[0.9998648,0.0000115479,0.000009681076,0.00005238064,0.00001874731,0.00004285462],"domain_scores_gemma":[0.9998806,0.00001066439,0.00003552239,0.00000871163,0.00002514503,0.00003934675],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002171157,0.00003476244,0.7539479,0.0002507215,0.0001126376,0.0002088507,0.001521891,0.0004893669,0.2218784,0.0002370453,0.0001781138,0.02092314],"study_design_scores_gemma":[0.00000117181,0.00001969461,0.997937,0.000004008715,0.00001699249,0.00005316952,0.0002357852,0.0002690521,0.001201051,0.00004275453,0.0002147314,0.000004630251],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991161,0.0002190713,0.000117062,0.00001134768,8.112397e-7,0.000003290293,0.0003403403,0.000002245285,0.0001897172],"genre_scores_gemma":[0.99871,0.0001882158,0.0002431769,0.00001597078,0.000001859467,0.000007840874,0.0005635993,0.000001559919,0.000267806],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01693045,"threshold_uncertainty_score":0.03366381,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002298418239473586,"score_gpt":0.1910002406381687,"score_spread":0.1887018223986951,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}