{"id":"W4413802148","doi":"10.1002/ecm.70027","title":"Co‐phylogenetic constraints on host breadth within an emerging fungal pathogen complex of global concern","year":2025,"lang":"en","type":"article","venue":"Ecological Monographs","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Agriculture and Agri-Food Canada","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Host (biology); Ecology; Fungal pathogen; Biology; Phylogenetic tree; Pathogen; Evolutionary biology; Microbiology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000419729,0.0002362399,0.0004391705,0.002046688,0.0008193557,0.0008087298,0.0002021133,0.000403028,0.003892254],"category_scores_gemma":[0.0009770859,0.0001741811,0.0002318988,0.002219564,0.0004640172,0.0006856809,0.0007338431,0.0004552026,0.0004881874],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003426039,"about_ca_system_score_gemma":0.0003146146,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001809794,"about_ca_topic_score_gemma":0.006256802,"domain_scores_codex":[0.9996977,0.0000685159,0.00001568674,0.0001013993,0.0000524108,0.00006421218],"domain_scores_gemma":[0.9986688,0.0004675136,0.0004175693,0.00009722503,0.0001163903,0.0002325983],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004057953,0.00006567645,0.76535,0.0003392704,0.0003134093,0.00051407,0.001496576,0.001928225,0.2012746,0.001804323,0.0007034128,0.02580449],"study_design_scores_gemma":[0.000004286568,0.00004133274,0.994123,0.00002256099,0.00004806219,0.0005251812,0.0006022715,0.0009327438,0.0008771928,0.0004770613,0.00233515,0.00001113011],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9949198,0.001495974,0.0008352411,0.00007901824,0.000004551936,0.000004709289,0.0005038301,0.00001684746,0.002140071],"genre_scores_gemma":[0.9978402,0.0005295428,0.0006954452,0.00003901714,0.000008929541,0.000005277516,0.0006047235,0.000007914628,0.0002689091],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003892254,"threshold_uncertainty_score":0.01302087,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02667423351704641,"score_gpt":0.2931296867171204,"score_spread":0.266455453200074,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}