{"id":"W4413802148","doi":"10.1002/ecm.70027","title":"Co‐phylogenetic constraints on host breadth within an emerging fungal pathogen complex of global concern","year":2025,"lang":"en","type":"article","venue":"Ecological Monographs","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Agriculture and Agri-Food Canada","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Host (biology); Ecology; Fungal pathogen; Biology; Phylogenetic tree; Pathogen; Evolutionary biology; Microbiology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001519928,0.0002307199,0.0002926768,0.00004744323,0.0001212431,0.00002181123,0.000290104,0.0002163857,0.0001333629],"category_scores_gemma":[0.00007995277,0.000197088,0.0001872013,0.00021371,0.0004377949,0.000003179813,0.00006928638,0.00008921278,0.000007437788],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001486293,"about_ca_system_score_gemma":0.00008697471,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006936142,"about_ca_topic_score_gemma":0.00004733251,"domain_scores_codex":[0.9985552,0.0001619358,0.0003419822,0.0004841578,0.0001320005,0.0003246533],"domain_scores_gemma":[0.9992946,0.00003203056,0.0001269875,0.0003069617,0.00007556204,0.000163818],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002762252,0.0006068039,0.3169895,0.00001867613,0.0001113446,0.0000461234,0.00001175216,0.00007606379,0.6772867,0.001778824,0.0007353317,0.002062634],"study_design_scores_gemma":[0.0007020243,0.001587288,0.9844365,0.00002239183,0.00005425296,0.00001927691,0.0001407759,0.0001278511,0.0117041,0.0003414354,0.0006038396,0.0002602372],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893901,0.0003169361,0.0002308654,0.00004114838,0.0001411634,0.0002672654,0.004026588,0.00002816462,0.005557726],"genre_scores_gemma":[0.9981126,0.00006757668,0.0004414933,0.0007149945,0.00004795665,0.00002438651,0.0005595428,0.000007730657,0.00002376561],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.667447,"threshold_uncertainty_score":0.8037015,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02667423351704641,"score_gpt":0.2931296867171204,"score_spread":0.266455453200074,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}