{"id":"W4413813367","doi":"10.1101/2025.08.28.672916","title":"Diverse strains of aster yellows phytoplasma are associated with the potato leafhopper ( <i>Empoasca fabae</i> ) in Eastern Canada","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Phytoplasmas and Hemiptera pathogens","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec – Nature et technologies; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Phytoplasma; Leafhopper; Biology; Aster yellows; Restriction fragment length polymorphism; Vector (molecular biology); Candidatus; Amplicon; Population; Botany; Nested polymerase chain reaction; Hemiptera; Veterinary medicine; Genotype; Genetics; Polymerase chain reaction; 16S ribosomal RNA; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003107919,0.0004828477,0.0006380071,0.00003975691,0.0001632821,0.00009713455,0.000717848,0.0003199978,0.00005981161],"category_scores_gemma":[0.00006778722,0.0002087921,0.0001460602,0.0006001697,0.0001295432,0.00008724091,0.0004328788,0.0006468183,0.000004234224],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002264497,"about_ca_system_score_gemma":0.0004377592,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.01143682,"about_ca_topic_score_gemma":0.4620259,"domain_scores_codex":[0.9976399,0.0001642786,0.0004349806,0.0007194288,0.0004812962,0.0005601071],"domain_scores_gemma":[0.998551,0.0001468118,0.0005108997,0.0003278006,0.0003107528,0.0001527814],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006607385,0.0002672426,0.8638682,0.0001459388,0.0002255881,0.0001485063,0.00004222147,0.000173732,0.1327807,0.00004481791,0.002210348,0.00002660621],"study_design_scores_gemma":[0.0004821657,0.00007765731,0.9669147,0.0009375109,0.00009674691,2.197982e-8,0.0001603643,0.0001753973,0.02344775,8.004266e-7,0.007019076,0.0006878244],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995514,0.0001602405,0.000002384579,0.0008859303,0.0003567656,0.0005223193,0.002412809,0.00005568639,0.00008989693],"genre_scores_gemma":[0.9991131,0.00003487569,0.0000352826,0.0005123346,0.0001438475,0.00006923643,0.000002462334,0.000006226226,0.00008257986],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4505891,"threshold_uncertainty_score":0.9951461,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01445928618202459,"score_gpt":0.1845743804824534,"score_spread":0.1701150943004288,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}