{"id":"W4413838946","doi":"10.1101/2025.08.28.671991","title":"′Candidatus Phytoplasma zeae′: community-driven delineation of the maize bushy stunt phytoplasma, a Dalbulus-transmitted corn pathogen confined to the Americas","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Phytoplasmas and Hemiptera pathogens","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Saskatoon City Hospital; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Fonds de recherche du Québec – Nature et technologies; Fundação de Amparo à Pesquisa e Inovação do Estado de Santa Catarina","keywords":"Phytoplasma; Biology; Pathogen; Candidatus; Virology; Botany; Polymerase chain reaction; Microbiology; Bacteria; Gene; Genetics; Restriction fragment length polymorphism; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001838745,0.0001972561,0.0001971856,0.0005997579,0.0002020697,0.0003719635,0.0001846356,0.0001870173,0.0002982805],"category_scores_gemma":[0.0002485937,0.0001251321,0.0002831039,0.0004197909,0.0001623302,0.0002140663,0.0002870584,0.0002902239,0.0001042145],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002833153,"about_ca_system_score_gemma":0.0003646132,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005559864,"about_ca_topic_score_gemma":0.007711952,"domain_scores_codex":[0.9998759,0.000008907173,0.000007225799,0.00005439486,0.00002677525,0.00002667659],"domain_scores_gemma":[0.9998798,0.00001390964,0.00004163914,0.000009153313,0.00003192953,0.00002357726],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001567898,0.00002453327,0.04338865,0.000131638,0.00001870381,0.00006820761,0.00040682,0.0001679206,0.9481348,0.0001422683,0.00006826383,0.007291461],"study_design_scores_gemma":[0.00002250336,0.000223324,0.8990288,0.00005476137,0.00006750542,0.0006862797,0.0009291316,0.004393638,0.08934186,0.0003258079,0.004903063,0.00002345017],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966148,0.0003523745,0.001559408,0.00002940715,0.000005335335,0.00003550531,0.0009199057,0.00001960845,0.0004636516],"genre_scores_gemma":[0.9917774,0.0002756543,0.005469462,0.00004312776,0.000004916154,0.00002574549,0.00213498,0.000009649589,0.0002589243],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005559864,"threshold_uncertainty_score":0.01105499,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01810423522168837,"score_gpt":0.2191708199121751,"score_spread":0.2010665846904867,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}