{"id":"W4413839630","doi":"10.1101/2025.08.29.672306","title":"Genomic and physiological characterization of 'Candidatus Methylocystis sumavensis', a novel acid-tolerant methanotroph from peatland","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Microbial metabolism and enzyme function","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Casa","funders":"Biologické Centrum, Akademie Věd České Republiky; Grantová Agentura České Republiky; Ministerstvo Školství, Mládeže a Tělovýchovy","keywords":"Methanotroph; Peat; Biology; Ecology; Methane; Anaerobic oxidation of methane","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001240569,0.0003276027,0.0003530587,0.0005647796,0.0002561121,0.0004864197,0.0002706081,0.0003408162,0.0003692911],"category_scores_gemma":[0.0003553893,0.0001843276,0.0003274394,0.0004831807,0.0001859704,0.0001659536,0.000499475,0.0003151384,0.0001968794],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000181342,"about_ca_system_score_gemma":0.0003801738,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003196308,"about_ca_topic_score_gemma":0.005054597,"domain_scores_codex":[0.9998308,0.00001072094,0.00002072571,0.00005476285,0.00005357723,0.00002925404],"domain_scores_gemma":[0.9997931,0.00003465035,0.00004061958,0.0000240237,0.00004618344,0.00006145264],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001214529,0.00002127129,0.006250109,0.00008301611,0.00001199686,0.0001214307,0.00009836328,0.00007549373,0.9894134,0.00002716072,0.00002646251,0.003749767],"study_design_scores_gemma":[0.00003156389,0.0004163878,0.745709,0.00004796066,0.0001388001,0.00309704,0.0007106109,0.001422459,0.2419019,0.00008573681,0.006395057,0.00004341476],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964471,0.0004994904,0.0008528461,0.00003590467,0.00001088167,0.00004195668,0.001666991,0.00001394295,0.0004307885],"genre_scores_gemma":[0.9899158,0.0003700934,0.002385104,0.00003367633,0.00001015896,0.00004022081,0.005779887,0.00001217667,0.001452822],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003196308,"threshold_uncertainty_score":0.006355405,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01279304956982124,"score_gpt":0.207130515603913,"score_spread":0.1943374660340917,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}