{"id":"W4413885205","doi":"10.1016/j.ympev.2025.108438","title":"Complex reticulation in backbone subfamily relationships in Leguminosae","year":2025,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Plant Diversity and Evolution","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal; University of British Columbia","funders":"Armenian Relief Society; Natural Sciences and Engineering Research Council of Canada; Agricultural Research Service; U.S. Department of Agriculture","keywords":"Biology; Subfamily; Evolutionary biology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000625319,0.0002021231,0.0004165211,0.001236693,0.000802571,0.0009751483,0.0004274601,0.0003968509,0.003079888],"category_scores_gemma":[0.001333652,0.0002515897,0.0001805873,0.0008687634,0.0005966338,0.000681778,0.0006077524,0.0005479724,0.0006582522],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003620842,"about_ca_system_score_gemma":0.0002121815,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009491181,"about_ca_topic_score_gemma":0.001654033,"domain_scores_codex":[0.9997136,0.00009178971,0.00001409255,0.0001092013,0.0000331154,0.00003816219],"domain_scores_gemma":[0.9987599,0.0004672391,0.0002865322,0.0001525305,0.0001434588,0.0001902702],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001057848,0.00008908399,0.1099127,0.0003143008,0.0002703312,0.0004214914,0.003636968,0.002584693,0.8234596,0.00751561,0.000324058,0.05041331],"study_design_scores_gemma":[0.0001052798,0.0003177503,0.9591081,0.00007026157,0.0001867345,0.001150863,0.001029847,0.01033512,0.01463577,0.005900781,0.007099695,0.00005979924],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964552,0.0003523151,0.001580689,0.00003647828,0.000003200669,0.000006169738,0.0001093893,0.00002417495,0.001432402],"genre_scores_gemma":[0.9979944,0.0001164993,0.001003161,0.0000402213,0.00001236318,0.000008003335,0.0002574997,0.00002014726,0.0005477882],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003079888,"threshold_uncertainty_score":0.01030326,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02169919582885765,"score_gpt":0.1996738411508904,"score_spread":0.1779746453220327,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}