{"id":"W4413919411","doi":"10.1016/j.xpro.2025.104051","title":"Protocol to assess changes in mitochondrial respiration in living cultured cells infected with flaviviruses","year":2025,"lang":"en","type":"article","venue":"STAR Protocols","topic":"Mosquito-borne diseases and control","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de la Recherche Scientifique","funders":"Fonds de Recherche du Québec - Santé; Canadian Institutes of Health Research; Institut national de la recherche scientifique; Armand-Frappier Foundation","keywords":"Biology; Virology; Respiration; Computational biology; Anatomy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002365286,0.0002321472,0.0004190212,0.0003608665,0.00004716045,0.00008918096,0.0001344179,0.0001241597,0.0001238967],"category_scores_gemma":[0.0002912775,0.0001773581,0.00004839058,0.0008657738,0.00002494232,0.0001189216,0.00006272711,0.000229865,0.00001325055],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001699816,"about_ca_system_score_gemma":0.0004255714,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002386097,"about_ca_topic_score_gemma":0.005881675,"domain_scores_codex":[0.9983068,0.0001843671,0.000377273,0.0004632357,0.0002979739,0.0003704134],"domain_scores_gemma":[0.9991477,0.00007472672,0.00009927621,0.000398236,0.0001595316,0.0001205506],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.02509685,0.003455734,0.22472,0.004214165,0.0001384719,0.0002741548,0.002162453,0.0003874467,0.7165868,0.0008080151,0.006203806,0.01595209],"study_design_scores_gemma":[0.04631272,0.008578551,0.478108,0.02558921,0.0001358426,0.000004995572,0.0006555666,0.001250406,0.2093832,0.0002789822,0.2284038,0.001298696],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"protocol","genre_gemma":"protocol","genre_scores_codex":[0.04410033,0.000002474957,0.0004123109,0.0006700398,0.00003854634,0.9536748,0.00001344809,0.0000857081,0.001002346],"genre_scores_gemma":[0.02351522,1.513889e-7,0.001104622,0.0009534052,0.0001672533,0.9736754,0.000006478719,0.00002313189,0.0005543072],"genre_candidate":"protocol","genre_consensus":"protocol","teacher_disagreement_score":0.5072036,"threshold_uncertainty_score":0.7232454,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03401201681630463,"score_gpt":0.3700197128357197,"score_spread":0.336007696019415,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}