{"id":"W4413986946","doi":"10.1128/msystems.00157-25","title":"Migration and standing variation in vaginal and rectal yeast populations in recurrent vulvovaginal candidiasis","year":2025,"lang":"en","type":"article","venue":"mSystems","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"University of Manitoba; Manitoba Medical Service Foundation; Research Manitoba; Natural Sciences and Engineering Research Council of Canada; Canadian Institute for Advanced Research","keywords":"Biology; Population; Candida albicans; Genotype; Genetic diversity; Loss of heterozygosity; Genetic variation; Genetics; Evolutionary biology; Gene; Demography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005224348,0.00007307449,0.0001344251,0.0004943101,0.00009264811,0.00003561304,0.00003060998,0.00008541936,0.00001410212],"category_scores_gemma":[0.0001472485,0.00007280699,0.000009410962,0.0003738415,0.00004830579,0.0001384485,0.00002470186,0.0002067901,0.000007109862],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001815814,"about_ca_system_score_gemma":0.00004931033,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006471258,"about_ca_topic_score_gemma":0.007746253,"domain_scores_codex":[0.9991041,0.0002655963,0.0002125905,0.0002419718,0.00002738056,0.0001483155],"domain_scores_gemma":[0.9997543,0.00005717762,0.00003941911,0.0001023778,0.00003763256,0.000009092346],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001029183,0.00009343884,0.9134918,0.00006813196,0.00002700043,0.000002508459,0.001290267,0.00003416045,0.07315626,0.004931707,0.000114719,0.006687032],"study_design_scores_gemma":[0.0006662362,0.00006352153,0.9957585,0.0001390578,0.000008020047,0.00003494182,0.000366718,0.0001871261,0.0008956026,0.0003084326,0.00150091,0.00007087586],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957768,0.001843964,0.0004074663,0.0003962105,0.0005115902,0.0003281024,0.0000101873,0.00001594653,0.0007097633],"genre_scores_gemma":[0.9994882,0.0000695499,0.0000301051,0.000003401898,0.00001665858,0.00005764167,0.00002477282,0.000003681065,0.0003059354],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0822667,"threshold_uncertainty_score":0.9782649,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03388959530477474,"score_gpt":0.327941007350381,"score_spread":0.2940514120456062,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}