{"id":"W4413992903","doi":"10.3389/fsci.2025.1514835","title":"The Earth BioGenome Project Phase II: illuminating the eukaryotic tree of life","year":2025,"lang":"en","type":"article","venue":"Frontiers in Science","topic":"Environmental DNA in Biodiversity Studies","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia","funders":"U.S. National Library of Medicine; Staatssekretariat für Bildung, Forschung und Innovation; Genome British Columbia; UK Research and Innovation; European Molecular Biology Laboratory; HORIZON EUROPE Framework Programme; Wellcome Trust; Arizona State University; University of California, Davis; National Institutes of Health; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Gordon and Betty Moore Foundation; Ambrose Monell Foundation; National Science Foundation","keywords":"Earth (classical element); Astrobiology; Tree of life (biology); Tree (set theory); Phase (matter); Earth science; Geology; Biology; Physics; Astronomy; Mathematics; Phylogenetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01645301,0.001436773,0.0007966316,0.002553385,0.002011683,0.005389304,0.002148313,0.003394818,0.004622769],"category_scores_gemma":[0.00989763,0.0005694295,0.001124593,0.002555173,0.00230176,0.005491311,0.005370403,0.005780118,0.004674746],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002432923,"about_ca_system_score_gemma":0.01334444,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00593871,"about_ca_topic_score_gemma":0.009198665,"domain_scores_codex":[0.996168,0.001355815,0.0001745547,0.000520052,0.001273707,0.0005078147],"domain_scores_gemma":[0.9914852,0.001630915,0.0007101126,0.0006278922,0.003743214,0.001802669],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"observational","study_design_scores_codex":[0.0003931035,0.0001213518,0.005311227,0.006731118,0.0001614894,0.0004011574,0.001959005,0.002110093,0.03279759,0.07122524,0.4908917,0.3878971],"study_design_scores_gemma":[0.00003002523,0.0001112072,0.002593081,0.001032487,0.0000403804,0.0001809068,0.0003291531,0.000287799,0.004706542,0.01209491,0.9785588,0.00003466779],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"review","genre_gemma":"empirical","genre_scores_codex":[0.0237715,0.3679909,0.2587604,0.1787774,0.0423855,0.002792085,0.02758235,0.004086866,0.09385309],"genre_scores_gemma":[0.05134798,0.263638,0.4552697,0.06475604,0.008726429,0.003820661,0.1031995,0.003943699,0.04529812],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01645301,"threshold_uncertainty_score":0.08701289,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01190320484645127,"score_gpt":0.2388655143919253,"score_spread":0.2269623095454741,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}