{"id":"W4414084959","doi":"10.1128/mra.00706-25","title":"Genomes of two siphophages infecting <i>Rhizobium leguminosarum</i> : B1VFA and V1VFA-S, exhibiting phage-plasmid-like features","year":2025,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Ministry of Agriculture - Saskatchewan","keywords":"Genome; ENCODE; Gene; Plasmid; DNA Transposable Elements; Transposable element; Human genome; Genomics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004745069,0.0003351225,0.0004638705,0.00007389712,0.0004254635,0.00006959651,0.0003941384,0.0002195576,0.00009366411],"category_scores_gemma":[0.00007467145,0.0001702676,0.0001343145,0.0004981818,0.0003027828,0.0001105457,0.0004396462,0.0002802175,0.00001785095],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005438997,"about_ca_system_score_gemma":0.00002180532,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002494237,"about_ca_topic_score_gemma":0.0001902289,"domain_scores_codex":[0.9979433,0.0002219899,0.000488259,0.000641497,0.0001015487,0.0006034395],"domain_scores_gemma":[0.9990074,0.0003961291,0.0002759963,0.0001383425,0.000111322,0.00007082154],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004136649,0.00008142123,0.09822851,0.00003445398,0.0001147708,0.000005706452,0.0001657444,7.24387e-7,0.8879166,0.00004395994,0.0061126,0.007254124],"study_design_scores_gemma":[0.002173538,0.0006010885,0.02300914,0.0003588508,0.0002085001,0.0001322993,0.001701116,0.000005030093,0.5745147,0.0002573594,0.3961364,0.000901976],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924803,0.003131697,0.000001017803,0.0008547606,0.0001927554,0.0003241391,0.0005465001,0.00009496725,0.002373829],"genre_scores_gemma":[0.9948116,0.0000423319,0.0001631896,0.002401806,0.0001218967,0.0000218197,0.0007549118,0.000003492645,0.001678981],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3900238,"threshold_uncertainty_score":0.6943312,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00688904488509292,"score_gpt":0.2211053762870292,"score_spread":0.2142163314019363,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}