{"id":"W4414084959","doi":"10.1128/mra.00706-25","title":"Genomes of two siphophages infecting <i>Rhizobium leguminosarum</i> : B1VFA and V1VFA-S, exhibiting phage-plasmid-like features","year":2025,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Ministry of Agriculture - Saskatchewan","keywords":"Genome; ENCODE; Gene; Plasmid; DNA Transposable Elements; Transposable element; Human genome; Genomics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008765943,0.0003354436,0.0001863254,0.000614899,0.0004256827,0.0003486287,0.0001971474,0.0002739399,0.0007111162],"category_scores_gemma":[0.0002463956,0.0001430859,0.0002556757,0.0004993741,0.0001986576,0.0001216893,0.0002223082,0.0003479946,0.0001845748],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009847127,"about_ca_system_score_gemma":0.001044895,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.05380044,"about_ca_topic_score_gemma":0.05611306,"domain_scores_codex":[0.9998875,0.000007260075,0.000004888479,0.00002479274,0.00003181667,0.00004381322],"domain_scores_gemma":[0.9997124,0.00005929672,0.00006469763,0.00001696718,0.00006901393,0.00007757662],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003228404,0.00002449627,0.005611048,0.0001158433,0.00001390525,0.0001114026,0.0003461785,0.0001305362,0.9902323,0.00009586746,0.00008121258,0.002914242],"study_design_scores_gemma":[0.00006422841,0.0004912396,0.7846725,0.00006185676,0.0001399019,0.001321704,0.001143094,0.001251899,0.1994843,0.0001884508,0.01112945,0.00005142141],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948219,0.000290832,0.0003550613,0.00003116872,0.000004434493,0.0000239827,0.00387604,0.00002430355,0.0005723133],"genre_scores_gemma":[0.9802356,0.0003290127,0.001826504,0.0000548113,0.000004251744,0.00003607622,0.01599417,0.00002210979,0.001497431],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05380044,"threshold_uncertainty_score":0.1069745,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00688904488509292,"score_gpt":0.2211053762870292,"score_spread":0.2142163314019363,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}