{"id":"W4414085120","doi":"10.1093/infdis/jiaf475","title":"Disentangling Temporal Trends of Clade Ib Monkeypox Virus Transmission in Burundi","year":2025,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"International Development Research Centre; Japan Science and Technology Agency; Caisse des dépôts et consignations; Japan Society for the Promotion of Science; Japan Agency for Medical Research and Development; Centers for Disease Control and Prevention; Nanyang Technological University; Ministry of Education, Culture, Sports, Science and Technology; Rotary Foundation; National University of Singapore; Foundation for Worldwide International Student Exchange; Ministry of Health -Singapore","keywords":"Monkeypox; Clade; Transmission (telecommunications); Virus; Disease transmission; Sexual transmission","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001298873,0.0003303082,0.0002191036,0.0004993377,0.0001688698,0.0006531756,0.0004634848,0.0004227548,0.0007815057],"category_scores_gemma":[0.002783222,0.0003059014,0.0004072568,0.0004464785,0.0001814821,0.0004599874,0.0003909645,0.0003181199,0.0001044852],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001058651,"about_ca_system_score_gemma":0.0006394607,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04498018,"about_ca_topic_score_gemma":0.034931,"domain_scores_codex":[0.9997596,0.00009338568,0.00001614379,0.00006293195,0.00001470376,0.00005333698],"domain_scores_gemma":[0.9994838,0.0002624474,0.0001449532,0.00002764925,0.00005239005,0.00002857153],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000156773,0.00005594245,0.6658313,0.00003121298,0.0001195455,0.0002410213,0.0001789847,0.3241,0.001824937,0.00140488,0.000249267,0.005806182],"study_design_scores_gemma":[0.00002077732,0.0001313831,0.259458,0.00003397436,0.00006871038,0.0001208177,0.0004172797,0.7374658,0.0007201319,0.0008325518,0.0007129181,0.00001760544],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982253,0.00004001547,0.001127243,0.0000577578,0.000001860386,0.000004743279,0.0002549417,0.000009596957,0.000278574],"genre_scores_gemma":[0.999099,0.0000218955,0.000424582,0.000006938844,8.131458e-7,0.000005696481,0.0003268426,0.000001724008,0.0001124983],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04498018,"threshold_uncertainty_score":0.08943671,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008978713760761698,"score_gpt":0.2809964669428555,"score_spread":0.2720177531820938,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}