{"id":"W4414144320","doi":"10.1101/2025.09.08.675001","title":"Labeling of Nascent RNA in <i>C. elegans</i> Intestine","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Transcription (linguistics); RNA; Ribosomal RNA; Nucleolus; RNA polymerase; Gene expression; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001984487,0.0002932204,0.0001442703,0.0002224265,0.0002452507,0.0003116204,0.0002593528,0.0003219153,0.001526686],"category_scores_gemma":[0.0001592468,0.000228045,0.0001630262,0.0001129872,0.000286365,0.0002341302,0.0002332235,0.0005019914,0.0007225217],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002651701,"about_ca_system_score_gemma":0.0002150724,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001002081,"about_ca_topic_score_gemma":0.001790285,"domain_scores_codex":[0.9998837,0.00001053258,0.000006384255,0.00005006543,0.00003243401,0.00001684371],"domain_scores_gemma":[0.9998729,0.00002870349,0.00003894383,0.00001978782,0.00002147332,0.00001815812],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001175887,0.000002128358,0.00005218939,0.00001323237,7.019576e-7,0.00001651603,0.000005017562,0.00003516457,0.9991485,0.00009024909,0.00004076058,0.0005836849],"study_design_scores_gemma":[0.000003091768,0.00002386905,0.001010345,0.000005412546,0.000002019152,0.00007862921,0.000007935295,0.0004768561,0.9960465,0.00003930682,0.002302716,0.000003347289],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8936322,0.00114433,0.09197868,0.0002494871,0.0001199673,0.0001326604,0.002166316,0.001219804,0.009356422],"genre_scores_gemma":[0.8654269,0.001637018,0.1114895,0.0002218964,0.00004526356,0.0002053769,0.00266972,0.00100233,0.01730205],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001526686,"threshold_uncertainty_score":0.005107284,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00911711230204896,"score_gpt":0.2190375001729364,"score_spread":0.2099203878708875,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}