{"id":"W4414160467","doi":"10.1128/spectrum.02181-25","title":"Combined oropharyngeal nasal (ON) swabs for the molecular detection of respiratory pathogens including <i>M. pneumoniae</i> in symptomatic children","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Respiratory viral infections research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Community Based Research Centre; Children's & Women's Health Centre of British Columbia; B.C. Women's Hospital & Health Centre; BC Children's Hospital; BC Centre for Disease Control; University of British Columbia","funders":"","keywords":"GeneXpert MTB/RIF; Incidence (geometry); Confidence interval; Respiratory system; Respiratory tract infections; Sputum","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006245155,0.0001932177,0.0004268713,0.0005259136,0.0001734988,0.00001187654,0.0002083029,0.0001998363,0.00001895643],"category_scores_gemma":[0.000258421,0.0001464169,0.0001481543,0.0006616764,0.0002578336,0.00003429976,0.0001171146,0.0004230165,0.00001969355],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002438123,"about_ca_system_score_gemma":0.0001693076,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004375441,"about_ca_topic_score_gemma":0.00009103126,"domain_scores_codex":[0.9984521,0.0002285738,0.0004775896,0.0003622337,0.00007569329,0.000403835],"domain_scores_gemma":[0.9989692,0.0003330965,0.0001069911,0.0004787836,0.00007126128,0.00004068781],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004164619,0.0001660926,0.04088156,0.00006556549,0.000161043,0.00001092923,0.00002438076,0.0000599354,0.9561432,0.0007533084,0.0001260616,0.001191482],"study_design_scores_gemma":[0.003118169,0.001994769,0.08590499,0.0001194837,0.00008565291,0.00003795062,0.00002602891,0.0001640038,0.9071464,0.0003352874,0.0009296907,0.0001375513],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952375,0.0005884297,0.0007816872,0.001182421,0.0002245069,0.001565358,0.00003138204,0.00005357187,0.0003351461],"genre_scores_gemma":[0.9981824,0.0000178909,0.0000342344,0.001415839,0.00004828647,0.00016471,0.00001570589,0.00002467042,0.00009631359],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04899677,"threshold_uncertainty_score":0.5970709,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01804478457749043,"score_gpt":0.3138274769863162,"score_spread":0.2957826924088258,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}