{"id":"W4414188712","doi":"10.1101/2025.09.09.675155","title":"<i>marApp</i> : An R package and web portal to calculate mutations- and genetic diversity-area relationship for conservation","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Species Distribution and Climate Change","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Biological and Environmental Research; Center for Computational, Evolutionary and Human Genomics, Stanford University; Carnegie Institution of Washington; U.S. Department of Energy; National Institutes of Health; National Science Foundation","keywords":"Genetic diversity; Conservation genetics; Biodiversity; Diversity (politics); Limiting; Habitat","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004720139,0.004294426,0.002427173,0.0037752,0.000834961,0.003349228,0.004408278,0.00152788,0.1363799],"category_scores_gemma":[0.02256115,0.002535858,0.002801569,0.002336826,0.001188051,0.002657735,0.003625879,0.003233824,0.07877294],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009620989,"about_ca_system_score_gemma":0.002659913,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004086408,"about_ca_topic_score_gemma":0.005076529,"domain_scores_codex":[0.9981347,0.000421221,0.0001591095,0.0004420195,0.0006596515,0.0001832945],"domain_scores_gemma":[0.9882576,0.007391605,0.001195501,0.001456243,0.001156165,0.0005428648],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002976462,0.00009085827,0.005123205,0.001329643,0.0005470657,0.0004606489,0.0002113191,0.00637546,0.002310442,0.006535931,0.9432985,0.03341933],"study_design_scores_gemma":[0.001184086,0.0002362548,0.01671584,0.0009201843,0.0005523057,0.001152837,0.0001731227,0.1447402,0.02117734,0.04745254,0.7651165,0.000578733],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.003681324,0.0003683043,0.1709213,0.0008897822,0.0004348681,0.0004004883,0.1197406,0.6952774,0.008285954],"genre_scores_gemma":[0.05100158,0.0007136494,0.3124235,0.001957489,0.0005243803,0.003903088,0.1266741,0.4895883,0.01321404],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.1363799,"threshold_uncertainty_score":0.4562362,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02990997349932788,"score_gpt":0.2344186624485783,"score_spread":0.2045086889492504,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}