{"id":"W4414211290","doi":"10.17504/protocols.io.5jyl885p7l2w/v1","title":"ARTIC LoCost Amplicon Sequencing Protocol (SQK-NBD114) v1","year":2025,"lang":"en","type":"article","venue":"","topic":"Cancer Genomics and Diagnostics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"British Columbia Centre for Disease Control; Oxford Nanopore Technologies; Wellcome Trust","keywords":"Minion; Nanopore sequencing; Protocol (science); Amplicon; Scheme (mathematics); Amplicon sequencing","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003080544,0.002467169,0.002798664,0.003989613,0.002075278,0.002126678,0.003595218,0.001864198,0.1267235],"category_scores_gemma":[0.006460199,0.002438133,0.002186145,0.002336206,0.001223136,0.00155917,0.002838949,0.004692496,0.1465541],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00100002,"about_ca_system_score_gemma":0.003386946,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001701903,"about_ca_topic_score_gemma":0.006745038,"domain_scores_codex":[0.9959607,0.0008223169,0.0004674234,0.001111856,0.001120663,0.0005171165],"domain_scores_gemma":[0.9970309,0.0004998975,0.0002024923,0.001289081,0.0007509009,0.0002266751],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001117229,0.0004679957,0.002788592,0.003722268,0.0001751628,0.0005189831,0.0009498834,0.001372528,0.5198759,0.01094985,0.35588,0.1021817],"study_design_scores_gemma":[0.0001954033,0.0003707572,0.002290766,0.0004722453,0.0002253617,0.001010463,0.0001693524,0.00304134,0.2384528,0.004314677,0.7492429,0.0002139311],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.02008233,0.003167446,0.682463,0.001115537,0.001340717,0.01254242,0.1406401,0.06690117,0.07174724],"genre_scores_gemma":[0.03217324,0.002433821,0.4114783,0.003046534,0.0002525498,0.02070084,0.3466107,0.03723227,0.1460716],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.1267235,"threshold_uncertainty_score":0.4239323,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01086798184728291,"score_gpt":0.2862361447627648,"score_spread":0.2753681629154819,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}