{"id":"W4414222406","doi":"10.1038/s44259-025-00154-8","title":"Towards the integration of antibiotic resistance gene mobility into environmental surveillance and risk assessment","year":2025,"lang":"en","type":"review","venue":"npj Antimicrobials and Resistance","topic":"Pharmaceutical and Antibiotic Environmental Impacts","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"National Key Research and Development Program of China; China Scholarship Council; Joint Programming Initiative on Antimicrobial Resistance","keywords":"Risk assessment; Antibiotic resistance; Limiting; Environmental risk assessment; Resistance (ecology); Human health; Antibiotics; Risk factor","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009702451,0.0005494577,0.001260816,0.00004788282,0.0004038911,0.0000837285,0.0004125612,0.000256289,0.0001202101],"category_scores_gemma":[0.00008861508,0.0003514921,0.0002328449,0.0002639532,0.001610138,0.0001589012,0.0005723067,0.0004836981,0.00001295261],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002470792,"about_ca_system_score_gemma":0.00005192099,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001487467,"about_ca_topic_score_gemma":0.0004350167,"domain_scores_codex":[0.9970181,0.0005577161,0.0008225048,0.0008662963,0.0003395573,0.0003958074],"domain_scores_gemma":[0.9983351,0.0003257786,0.0006087071,0.0005791563,0.000005576688,0.0001456355],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009633927,0.000999291,0.008591676,0.02194203,0.0004270737,0.00002875851,0.0003186172,0.000009628037,0.02531722,0.0003344554,0.003331448,0.9386035],"study_design_scores_gemma":[0.001133887,0.0001405583,0.09462346,0.01646016,0.001753869,0.00003665125,0.0001447076,0.00004301835,0.008142645,0.001084849,0.8744698,0.001966406],"study_design_candidate":"design_other","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.01435972,0.9808862,0.0002376982,0.0002115871,0.000159364,0.001112105,0.0006393812,0.00002245535,0.002371556],"genre_scores_gemma":[0.04573292,0.9497606,0.002963162,0.00008536962,0.00003032325,0.000007610374,0.00005574896,0.00002682802,0.001337491],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.936637,"threshold_uncertainty_score":0.9998937,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02413954340997237,"score_gpt":0.3135310628893089,"score_spread":0.2893915194793366,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}