{"id":"W4414242092","doi":"10.1128/spectrum.00780-25","title":"Clinical carbapenem-resistant <i>Enterobacterales</i> in a University Hospital in Dakar, Senegal: genomic insights into <i>Enterobacter hormaechei</i> ST182 strains carrying <i>bla</i> <sub>NDM-5</sub> and <i>bla</i> <sub>OXA-48</sub> genes","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre for Global Health Research","funders":"World Health Organization","keywords":"Colistin; Amikacin; Gene; Plasmid; Polymerase chain reaction; Antibiotic resistance; Sequence analysis; Whole genome sequencing","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0005611529,0.0008348855,0.001090665,0.0004275232,0.0002285599,0.0001020932,0.0008474723,0.001031242,0.000005327326],"category_scores_gemma":[0.00005680278,0.0009036582,0.0003504425,0.000476398,0.0009384904,0.00005879664,0.0009938569,0.0008130581,0.00002202405],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003779606,"about_ca_system_score_gemma":0.0003842375,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002632411,"about_ca_topic_score_gemma":0.01638243,"domain_scores_codex":[0.9948869,0.0006951009,0.001263431,0.001882583,0.0001098951,0.001162142],"domain_scores_gemma":[0.998226,0.00007102933,0.000395855,0.0009926317,0.00008849927,0.0002260108],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006261332,0.0003041267,0.1836377,0.00009276898,0.000195462,0.0001608418,0.000146504,0.00001098868,0.8133403,0.00007488103,0.000853512,0.0005567699],"study_design_scores_gemma":[0.004431004,0.0005514462,0.2384204,0.0003242363,0.0001119169,0.00005754095,0.0003858503,0.00001884974,0.7411262,0.0001503215,0.01327847,0.001143778],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994128,0.002645099,0.0001879811,0.0006291437,0.001081472,0.0008387063,0.0001644829,0.00006107759,0.0002640551],"genre_scores_gemma":[0.9921475,0.005423435,0.0002897113,0.00120783,0.0002132876,0.00001050398,0.0005216442,0.00008026172,0.0001057954],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07221413,"threshold_uncertainty_score":0.9993414,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004527527657736846,"score_gpt":0.2173333580951841,"score_spread":0.2128058304374473,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}