{"id":"W4414244136","doi":"10.3390/genes16091094","title":"Updated Sequence and Annotation of the Broad Host Range Rhizobial Symbiont Sinorhizobium fredii HH103 Genome","year":2025,"lang":"en","type":"article","venue":"Genes","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Agencia Estatal de Investigación; Junta de Andalucía; Queen's University; Universidad de Sevilla","keywords":"Genome; Plasmid; Transposable element; Replicon; Whole genome sequencing; Genome project; DNA sequencing; Chromosome; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001097922,0.0001058994,0.0001316893,0.00001323484,0.0001779305,0.00003556698,0.0002426521,0.00008197755,0.00006931204],"category_scores_gemma":[0.00003245522,0.00003835224,0.00006397797,0.0004103699,0.0001103601,0.00007374609,0.0001062385,0.00005947112,0.000008706994],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002117856,"about_ca_system_score_gemma":0.00001152243,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006250587,"about_ca_topic_score_gemma":0.0003089081,"domain_scores_codex":[0.9992228,0.00007600838,0.0001824111,0.0002194692,0.0001338674,0.0001655173],"domain_scores_gemma":[0.9996555,0.00005495811,0.00008445468,0.0000795484,0.0000942332,0.0000312829],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001451661,0.00001920658,0.03670117,0.000007617144,0.00001521651,4.753007e-7,0.00005777309,1.883555e-7,0.9589235,0.0001731982,0.0002168718,0.003870232],"study_design_scores_gemma":[0.0001435324,0.00004757152,0.7053209,0.0000203522,0.00002990656,0.000003281785,0.0001054444,0.000007631148,0.2923579,0.000290565,0.001567252,0.0001056905],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963915,0.0008377268,6.360293e-7,0.001930724,0.0002282052,0.0002072962,0.0001137851,0.00003647339,0.0002537027],"genre_scores_gemma":[0.9991211,0.00002995934,0.00006333792,0.0002811968,0.00008809997,0.00000906465,0.00003217373,7.300047e-7,0.0003743363],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6686197,"threshold_uncertainty_score":0.1563959,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01226744796050708,"score_gpt":0.2138366451732866,"score_spread":0.2015691972127795,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}