{"id":"W4414244136","doi":"10.3390/genes16091094","title":"Updated Sequence and Annotation of the Broad Host Range Rhizobial Symbiont Sinorhizobium fredii HH103 Genome","year":2025,"lang":"en","type":"article","venue":"Genes","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Agencia Estatal de Investigación; Junta de Andalucía; Queen's University; Universidad de Sevilla","keywords":"Genome; Plasmid; Transposable element; Replicon; Whole genome sequencing; Genome project; DNA sequencing; Chromosome; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005859972,0.001115084,0.001153705,0.002471132,0.0006950675,0.0008117503,0.0007690781,0.0008734297,0.003438213],"category_scores_gemma":[0.001116475,0.000495887,0.0009406749,0.00335065,0.000230253,0.00059471,0.0006321541,0.001615691,0.003221178],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008826808,"about_ca_system_score_gemma":0.002311477,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007917031,"about_ca_topic_score_gemma":0.008347501,"domain_scores_codex":[0.9994505,0.00004031203,0.0000634167,0.0001747945,0.000196827,0.00007421563],"domain_scores_gemma":[0.9990885,0.0001092085,0.0001449896,0.00009264763,0.0004013158,0.000163258],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002498613,0.0003011749,0.008112181,0.004164711,0.0001947844,0.001677966,0.001235214,0.001908027,0.8383043,0.0006853164,0.02303796,0.1178797],"study_design_scores_gemma":[0.0005474396,0.0007553834,0.2451037,0.0008704693,0.001751756,0.005526617,0.000902714,0.00923144,0.1703609,0.001038945,0.5635499,0.0003606459],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5035033,0.0120774,0.0635645,0.001403366,0.001251227,0.0007002497,0.4014629,0.007051054,0.008986009],"genre_scores_gemma":[0.1182144,0.003935202,0.08449773,0.0002877658,0.0002255409,0.0003458447,0.785521,0.001337125,0.005635522],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007917031,"threshold_uncertainty_score":0.01574188,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01226744796050708,"score_gpt":0.2138366451732866,"score_spread":0.2015691972127795,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}