{"id":"W4414312920","doi":"10.1016/j.humimm.2025.111510","title":"Comparison between real-time PCR and next generation sequence for deceased donor typing","year":2025,"lang":"en","type":"article","venue":"Human Immunology","topic":"Molecular Biology Techniques and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Sequence (biology); Typing; DNA sequencing; Polymerase chain reaction; Sequence analysis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001104576,0.000115351,0.000171064,0.00005307603,0.0002321775,0.00002226711,0.0001497364,0.0002375637,0.00001037999],"category_scores_gemma":[0.00002525856,0.0001219706,0.00004712142,0.00005076117,0.0001538921,0.000002749386,0.00009720811,0.00006636753,0.000003662148],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001457742,"about_ca_system_score_gemma":0.00003679365,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002607625,"about_ca_topic_score_gemma":0.00001686859,"domain_scores_codex":[0.9992217,0.00004979865,0.0002106646,0.0003250384,0.00001682884,0.0001759276],"domain_scores_gemma":[0.9995207,0.00001691057,0.00007594833,0.0003026156,0.0000621824,0.00002170252],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000150527,0.00001746691,0.002017702,0.000007398737,0.00005991941,1.067666e-7,0.0000107481,0.000001269842,0.9882664,0.004530436,0.00190584,0.003167663],"study_design_scores_gemma":[0.0007503358,0.0004683666,0.01062323,0.00001855606,0.0000758673,0.00000481782,0.00002289578,0.000409247,0.8835608,0.001426215,0.1023548,0.0002848812],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9685563,0.0007643703,0.02912531,0.0003568203,0.0000337257,0.0004109262,0.00002205543,0.00004023757,0.000690191],"genre_scores_gemma":[0.9918158,0.0001950682,0.005636832,0.0002468688,0.0001146086,0.0002096066,0.001110877,0.00001271983,0.0006575835],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1047056,"threshold_uncertainty_score":0.4973817,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06221983452169799,"score_gpt":0.3569912022242502,"score_spread":0.2947713677025522,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}