{"id":"W4414324149","doi":"10.1101/2025.09.16.25335757","title":"Surface sampling for mpox virus in multiple healthcare settings in Sierra Leone, June 2025","year":2025,"lang":"en","type":"preprint","venue":"medRxiv","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Toronto General Hospital; University of Toronto; University Health Network; Public Health Agency of Canada; University of Manitoba","funders":"Canadian Institutes of Health Research; Directorate for Biological Sciences; International Development Research Centre","keywords":"Sierra leone; Outbreak; Infection control; Doors; Transmission (telecommunications); Health care; Contamination; Contact tracing; Sampling (signal processing)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001113247,0.0005603256,0.0002833229,0.001135082,0.0009013127,0.0009093283,0.0003902084,0.0004332972,0.0004826714],"category_scores_gemma":[0.001600403,0.0003757664,0.0001731055,0.0006064542,0.000695964,0.0003408218,0.001345915,0.0003115697,0.00007420138],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005605243,"about_ca_system_score_gemma":0.00119319,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0248449,"about_ca_topic_score_gemma":0.04031999,"domain_scores_codex":[0.9992214,0.0002763204,0.00006851481,0.0001684904,0.0001064043,0.0001588325],"domain_scores_gemma":[0.9991693,0.0001505614,0.0003726113,0.00003912071,0.0001341568,0.0001342584],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006309726,0.00005780425,0.9896753,0.000115896,0.00002760301,0.000574026,0.002458823,0.00005037355,0.001790675,0.00001915078,0.0001685729,0.004998612],"study_design_scores_gemma":[0.00001048554,0.0002819811,0.9918351,0.00009186928,0.0000203147,0.0009042722,0.005330829,0.0001210411,0.000623016,0.00002061872,0.0007551839,0.0000053115],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989387,0.0003726554,0.0001155351,0.0000438858,0.00000569484,0.00007915453,0.0001396824,0.000003674348,0.0003010191],"genre_scores_gemma":[0.9987735,0.0003064129,0.0005110104,0.00006206411,0.000008618635,0.00005241107,0.0001413693,0.000001235604,0.000143465],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0248449,"threshold_uncertainty_score":0.04940057,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06067362639261532,"score_gpt":0.3458966254769399,"score_spread":0.2852229990843246,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}