{"id":"W4414345368","doi":"10.1094/phytofr-09-25-0096-a","title":"Draft Genome Sequence of <i>Phytophthora abietivora</i> , a Root Rot Pathogen of True Firs in Managed Plantations","year":2025,"lang":"en","type":"article","venue":"PhytoFrontiers™","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Sport Centre Pacific; Natural Resources Canada; Canadian Forest Service","funders":"Canadian Forest Service","keywords":"Genome; Nanopore sequencing; Sequence assembly; Whole genome sequencing; Pathogenicity; Pathogen; Reference genome; Root rot","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001948563,0.0001348096,0.0003245821,0.00004737847,0.00007319103,0.00001197609,0.0002994921,0.00008264096,0.00003376407],"category_scores_gemma":[0.00002729774,0.00006461045,0.0001070718,0.0006756817,0.00009819114,0.00008193793,0.00004914191,0.0001028833,0.000002700203],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002756204,"about_ca_system_score_gemma":0.00002120129,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001499988,"about_ca_topic_score_gemma":0.001203784,"domain_scores_codex":[0.9988977,0.00008013725,0.0003606484,0.0002686816,0.0001561708,0.0002366498],"domain_scores_gemma":[0.9995643,0.00009087034,0.0001540012,0.00009555148,0.00005321783,0.00004209084],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007655891,0.00009376504,0.0342321,0.00007597866,0.00001908258,0.00001770237,0.00005418982,0.00005874404,0.9612724,0.0002460492,0.0002948662,0.003558631],"study_design_scores_gemma":[0.0002979554,0.00009927802,0.9703822,0.0002054409,0.00002905396,0.000003869573,0.0005487789,0.000107069,0.01410687,0.001297724,0.01270412,0.0002176434],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922381,0.001571993,0.00007682788,0.0002701502,0.0001653679,0.0002762237,0.001402399,0.00001972976,0.003979185],"genre_scores_gemma":[0.9981734,0.0002186545,0.0004094902,0.0000478514,0.00002849011,0.00002552645,0.0001379314,9.828179e-7,0.0009576487],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9471655,"threshold_uncertainty_score":0.2634738,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01189183279314523,"score_gpt":0.2202426074977731,"score_spread":0.2083507747046278,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}