{"id":"W4414372028","doi":"10.1002/ctm2.70466","title":"Gene expression differences in differentially methylated sites associated with HIV status and cocaine use","year":2025,"lang":"en","type":"article","venue":"Clinical and Translational Medicine","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Simon Fraser University; British Columbia Centre on Substance Use; University of British Columbia","funders":"National Institute on Drug Abuse","keywords":"Human immunodeficiency virus (HIV); Gene expression; Cocaine use; Gene; Cocaine dependence; Drug","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009748691,0.0001129064,0.000198816,0.0003670433,0.0001936693,0.0002909712,0.0001023107,0.0001983648,0.003393187],"category_scores_gemma":[0.0003355707,0.0000876458,0.0001789275,0.0004332258,0.0001451313,0.0001053538,0.000167212,0.0002434154,0.0002124453],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001328557,"about_ca_system_score_gemma":0.000129884,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001424911,"about_ca_topic_score_gemma":0.002441666,"domain_scores_codex":[0.999895,0.00001818526,0.000004933915,0.00003656785,0.00001403518,0.00003127572],"domain_scores_gemma":[0.9998274,0.00005750764,0.00004625586,0.000008970281,0.00002102388,0.00003886485],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.004649757,0.000116126,0.5314448,0.0001218316,0.0004580748,0.0003188285,0.0003874389,0.0002193127,0.4445036,0.0003822765,0.0002759441,0.01712186],"study_design_scores_gemma":[0.00001060569,0.0001469772,0.989631,0.00000603544,0.00007119551,0.0002704449,0.000221215,0.0004057548,0.008700139,0.0001513687,0.0003794694,0.000005839726],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99791,0.0004289131,0.0002662326,0.00003768251,0.0000102877,0.00000418645,0.0007348868,0.000006371113,0.0006014422],"genre_scores_gemma":[0.997816,0.0001623743,0.0002576951,0.00003333962,0.000008463488,0.00001130988,0.0003718347,0.000003932087,0.001335261],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003393187,"threshold_uncertainty_score":0.01135129,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04163469064744831,"score_gpt":0.3268513576041104,"score_spread":0.2852166669566621,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}