{"id":"W4414373989","doi":"10.1101/2025.09.17.676560","title":"Bacterial suppression of intestinal fungi via activation of human gut γδ T-cells","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Brock University","funders":"Wellcome Trust","keywords":"Extracellular; Immunity; Population; Macrophage; Immune system; Bacteria; Fungus; Gut flora","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001646365,0.0002835066,0.0001579267,0.0001660084,0.0001110056,0.0003897261,0.00008079325,0.0001868016,0.00373776],"category_scores_gemma":[0.0001211413,0.00009023047,0.000208318,0.0001493882,0.00009045911,0.00006626704,0.0001938204,0.000370355,0.00108651],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001160228,"about_ca_system_score_gemma":0.0001357689,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000470183,"about_ca_topic_score_gemma":0.000433903,"domain_scores_codex":[0.9998744,0.00002496148,0.000006650007,0.00003327815,0.0000250674,0.00003565249],"domain_scores_gemma":[0.9999671,0.00000504211,0.000005265128,0.000008354809,0.000005943109,0.000008300834],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0006266622,0.00003919963,0.0009974428,0.00008355459,0.000009596997,0.00009346941,0.00003856386,0.00009847748,0.9902797,0.00009729344,0.0004553614,0.007180762],"study_design_scores_gemma":[0.0002033429,0.0009398005,0.02967532,0.00003937739,0.00003701641,0.0009208288,0.0002140549,0.001205989,0.9460824,0.0002339768,0.02043718,0.00001072466],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9845139,0.004403993,0.003238925,0.0003094126,0.0001316104,0.00005570492,0.001285531,0.0001124406,0.005948421],"genre_scores_gemma":[0.9907029,0.001258055,0.001601559,0.0001849071,0.0000353474,0.00004618986,0.001270205,0.000017985,0.004882982],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00373776,"threshold_uncertainty_score":0.01250404,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02303121861225626,"score_gpt":0.2775596062308629,"score_spread":0.2545283876186066,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}