{"id":"W4414394134","doi":"10.1038/s41588-025-02325-9","title":"Bryophytes hold a larger gene family space than vascular plants","year":2025,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Bryophyte Studies and Records","field":"Agricultural and Biological Sciences","cited_by":30,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Bryophyte; Horizontal gene transfer; Gene; Gene family; Genetic diversity; Extant taxon; Vascular plant","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001021439,0.0001808929,0.0002080667,0.00001486616,0.0002473166,0.00004604191,0.0002872153,0.0003624303,0.00003410441],"category_scores_gemma":[0.00001789228,0.00006599879,0.0001559058,0.0003502317,0.00004881994,0.00001974808,0.0001538919,0.0003617049,0.00002241454],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001640193,"about_ca_system_score_gemma":0.00001158554,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004551925,"about_ca_topic_score_gemma":0.0002212405,"domain_scores_codex":[0.9989389,0.00003342843,0.0001426931,0.0003368403,0.0002125033,0.0003355913],"domain_scores_gemma":[0.9996546,0.00006093868,0.00004464904,0.000103725,0.00007350151,0.00006259567],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001039396,0.0004288575,0.1620463,0.00007521717,0.0006074419,0.00005061047,0.0001885798,0.00006328902,0.3847339,0.0006323759,0.2757042,0.1753653],"study_design_scores_gemma":[0.0001160907,0.00005794691,0.5399865,0.00001954782,0.00001922389,0.000001211639,0.00009180442,0.00003283591,0.003786875,0.0002946358,0.4554488,0.0001445155],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9579311,0.03264092,0.000005701711,0.001376745,0.003452257,0.0001731507,0.00007221323,0.00005967124,0.004288249],"genre_scores_gemma":[0.9886545,0.005467285,0.0004350064,0.001648493,0.001855777,0.000009781123,0.00003571608,0.000001630175,0.001891831],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.380947,"threshold_uncertainty_score":0.2795394,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007301292246713342,"score_gpt":0.2141507321872349,"score_spread":0.2068494399405215,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}