{"id":"W4414422533","doi":"10.1093/evlett/qraf016","title":"Dynamics of infection and immunity over 50 years as marine stickleback adapt to freshwater","year":2025,"lang":"en","type":"article","venue":"Evolution Letters","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Stickleback; Population; Immune system; Immunity; Three-spined stickleback; Host (biology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0000685788,0.00005299847,0.00006135157,0.00005728343,0.00006322105,0.000005581574,0.00004396851,0.00004153973,0.001119481],"category_scores_gemma":[0.0000265707,0.00005397101,0.00002257092,0.0001157811,0.0001038174,0.00009624154,0.0001249761,0.00009070266,0.0001990497],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002031833,"about_ca_system_score_gemma":0.000004028567,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007373644,"about_ca_topic_score_gemma":0.004989909,"domain_scores_codex":[0.999613,0.00003933961,0.00009451459,0.0001108368,0.0000505574,0.00009179168],"domain_scores_gemma":[0.9998052,0.00002723827,0.00002770417,0.0001096088,0.000003787949,0.00002651899],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004863835,0.00003590377,0.9599594,0.000003216607,0.00001879798,6.880624e-7,0.00007550888,0.0019246,0.02792222,0.0007925307,0.008015321,0.001203153],"study_design_scores_gemma":[0.0001050498,0.00002880551,0.9861497,0.000007271291,0.00001035439,0.000002506617,0.000008904817,0.001268403,0.0001775094,0.000334489,0.01185582,0.00005115078],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9878401,0.000003796835,0.006490786,0.00243686,0.0001984507,0.00008026139,0.00001098332,0.00001515869,0.002923572],"genre_scores_gemma":[0.9971462,0.000004738336,0.0004187286,0.001012834,0.00001017946,0.000005413144,0.00001561232,0.00000245261,0.00138383],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02774471,"threshold_uncertainty_score":0.9997936,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004503724421726064,"score_gpt":0.2690251811756742,"score_spread":0.2645214567539481,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}