{"id":"W4414430626","doi":"10.1139/bcb-2025-0228","title":"The pseudogene RPS27AP5 expresses ubiquitin and ribosomal protein variants with potential roles in ribosome function","year":2025,"lang":"en","type":"article","venue":"Biochemistry and Cell Biology","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"Canadian Institutes of Health Research","keywords":"Pseudogene; Ribosome; Ribosomal protein; Polysome; Gene; Eukaryotic Ribosome; Ubiquitin; Ribosomal RNA; Eukaryotic Large Ribosomal Subunit; Messenger RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001938067,0.0006471299,0.0003006253,0.0005871897,0.0002757861,0.0003807131,0.0003682073,0.000397204,0.00184286],"category_scores_gemma":[0.0001841285,0.0002339856,0.0004988858,0.0005185133,0.0004221671,0.0002483009,0.0004021127,0.0005598387,0.001056665],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004227476,"about_ca_system_score_gemma":0.0002827939,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003636924,"about_ca_topic_score_gemma":0.0005022963,"domain_scores_codex":[0.9997687,0.0000406039,0.00002752842,0.00005562682,0.00007776038,0.00002983009],"domain_scores_gemma":[0.9997686,0.00005028906,0.00007845902,0.0000393441,0.00002092293,0.00004241092],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000922791,0.00001591707,0.0002272382,0.00003378445,0.000005248443,0.000113693,0.00001763826,0.00006035598,0.9974574,0.0004263096,0.00004868493,0.001501416],"study_design_scores_gemma":[0.00001133942,0.0003180147,0.003615984,0.000008580364,0.00002454894,0.0009213907,0.00004350858,0.0008855386,0.9820158,0.0001708885,0.01197119,0.00001307358],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9736629,0.001858982,0.01907433,0.000153328,0.00010766,0.00009512892,0.002132106,0.0004071101,0.00250855],"genre_scores_gemma":[0.9543197,0.001349381,0.02275435,0.00008904062,0.00003187966,0.0001162361,0.009009533,0.0002160776,0.01211395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00184286,"threshold_uncertainty_score":0.006164968,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003347746053783813,"score_gpt":0.2042375534210082,"score_spread":0.2008898073672244,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}