{"id":"W4414452644","doi":"10.1111/ele.70213","title":"Gene Family Expansions Provide Molecular Flexibility Required for Context‐Dependent Species Interactions","year":2025,"lang":"en","type":"article","venue":"Ecology Letters","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Division of Environmental Biology; National Institute of Food and Agriculture; Division of Biological Infrastructure; University of Miami","keywords":"Gene duplication; Gene family; Context (archaeology); Gene; Flexibility (engineering); Adaptation (eye); Genomics; Genome; Functional genomics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001606568,0.0001556519,0.000179323,0.00007741943,0.0001557641,0.0000182286,0.0002049099,0.0001322227,0.00002161885],"category_scores_gemma":[0.0001801238,0.0001662885,0.0001919159,0.00007390339,0.0001743925,0.000004191637,0.0001251724,0.0000998174,0.00001201024],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007724175,"about_ca_system_score_gemma":0.0001231333,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001692942,"about_ca_topic_score_gemma":0.0005365117,"domain_scores_codex":[0.9988269,0.00008475522,0.0002705993,0.0004625887,0.00006549395,0.0002896852],"domain_scores_gemma":[0.9992691,0.0000450699,0.00006488361,0.000468083,0.0000964709,0.00005638753],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009002693,0.0001227425,0.00212937,0.0000139276,0.0002055423,0.000003601695,0.00002280691,0.001591623,0.9719033,0.0006686046,0.02269566,0.0005527681],"study_design_scores_gemma":[0.004778866,0.00087211,0.06696501,0.00003398232,0.0003830188,0.00003190429,0.0009890859,0.004425505,0.4976482,0.001521133,0.4213606,0.0009905504],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8661084,0.0002502422,0.1229386,0.008104356,0.0008925302,0.0005828992,0.00006620798,0.00002986947,0.001026907],"genre_scores_gemma":[0.977401,0.0000335109,0.002500743,0.01441288,0.00008958361,0.0001778661,0.0002357697,0.00001541275,0.005133265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4742551,"threshold_uncertainty_score":0.6781051,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01442861418067814,"score_gpt":0.28088800547172,"score_spread":0.2664593912910419,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}