{"id":"W4414452644","doi":"10.1111/ele.70213","title":"Gene Family Expansions Provide Molecular Flexibility Required for Context‐Dependent Species Interactions","year":2025,"lang":"en","type":"article","venue":"Ecology Letters","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Division of Environmental Biology; National Institute of Food and Agriculture; Division of Biological Infrastructure; University of Miami","keywords":"Gene duplication; Gene family; Context (archaeology); Gene; Flexibility (engineering); Adaptation (eye); Genomics; Genome; Functional genomics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001742095,0.0002023288,0.0002507004,0.0003365627,0.0002587245,0.0003328194,0.0002156359,0.0004168141,0.001325529],"category_scores_gemma":[0.0004346659,0.0002105558,0.000239664,0.0003034351,0.0003806413,0.0007241302,0.0004524552,0.0005243194,0.000561219],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002162193,"about_ca_system_score_gemma":0.0001334226,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000228868,"about_ca_topic_score_gemma":0.0006326377,"domain_scores_codex":[0.9998652,0.00001459466,0.000007534285,0.00005749062,0.0000240887,0.00003108256],"domain_scores_gemma":[0.9997519,0.00008164094,0.00007146116,0.00004093311,0.00001779247,0.00003632239],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008203663,0.000008704521,0.00787981,0.00003762432,0.00001502914,0.0003393654,0.0001038199,0.0004840381,0.9834986,0.0006759576,0.00006212248,0.006812888],"study_design_scores_gemma":[0.00003720487,0.0002908375,0.6477091,0.00006173684,0.0001510854,0.005891168,0.000776605,0.01185866,0.3057562,0.007638598,0.01973878,0.00008998501],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9930132,0.0007663051,0.004563307,0.0001044667,0.00001066738,0.000004324231,0.0001965039,0.00008667097,0.001254507],"genre_scores_gemma":[0.9966667,0.0002871042,0.002180911,0.00008000212,0.00001468066,0.000008157282,0.0002559277,0.00002653385,0.0004798319],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001325529,"threshold_uncertainty_score":0.004434288,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01442861418067814,"score_gpt":0.28088800547172,"score_spread":0.2664593912910419,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}