{"id":"W4414466025","doi":"10.1158/2326-6074.cimm25-pr-09","title":"Abstract PR-09: Meta-Analysis of Neoantigens: Insights from the Cancer Epitope Database and Analysis Resource (CEDAR)","year":2025,"lang":"en","type":"article","venue":"Cancer Immunology Research","topic":"Monoclonal and Polyclonal Antibodies Research","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Epitope; Human leukocyte antigen; Cancer; Gene; Colorectal cancer; Mutation; MHC class I; Major histocompatibility complex","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.001264763,0.0002538019,0.001650576,0.001547788,0.0005054744,0.00005344685,0.0007420992,0.0002048388,0.003785851],"category_scores_gemma":[0.0003872577,0.0001493416,0.0008940928,0.005825117,0.001816979,0.00008515998,0.0007426569,0.001245415,0.00001666579],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001210077,"about_ca_system_score_gemma":0.0006610843,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04852464,"about_ca_topic_score_gemma":0.007785834,"domain_scores_codex":[0.9963327,0.000691697,0.0006194685,0.0008085191,0.0009065143,0.0006411254],"domain_scores_gemma":[0.9951931,0.002359086,0.0001383737,0.001364312,0.0008039889,0.0001411001],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"meta_analysis","study_design_gemma":"observational","study_design_scores_codex":[0.00229215,0.0002342978,0.1257629,0.000152587,0.7748339,0.00009680367,0.0009557834,0.0001318493,0.07084709,0.001707238,0.007849131,0.01513621],"study_design_scores_gemma":[0.0007167439,0.00010462,0.7439098,0.00005962218,0.1510013,0.000001571702,0.0007476548,0.0007106757,0.01294472,0.0002551269,0.08935624,0.0001919183],"study_design_candidate":"meta_analysis","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6904427,0.2883321,0.0000263466,0.01683346,0.00006235333,0.0004752143,0.001005158,0.00001661174,0.00280596],"genre_scores_gemma":[0.9555741,0.03519163,0.0001049381,0.0008092241,0.0001134184,0.0003358437,0.0004627294,0.00002083931,0.007387273],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6238326,"threshold_uncertainty_score":0.9971249,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.175173290439086,"score_gpt":0.4515171868401038,"score_spread":0.2763438964010179,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}