{"id":"W4414500756","doi":"10.1093/gbe/evaf183","title":"<i>De Novo</i> Genome Sequence Assembly of the RNAi-Tractable <i>Paramecium bursaria</i> 186b: An Endosymbiotic Model System","year":2025,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"University of Exeter","keywords":"Endosymbiosis; Genome; Gene; Model organism; Whole genome sequencing; Eukaryote; Reverse genetics; Facultative; Sequence assembly","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003102879,0.0006288515,0.000577388,0.0008757943,0.0006965346,0.0007689726,0.00048964,0.0004044227,0.003286699],"category_scores_gemma":[0.0008511758,0.0004217984,0.0008304596,0.001349974,0.0002395539,0.0003875347,0.0005393501,0.001727501,0.002929928],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004725674,"about_ca_system_score_gemma":0.0009486172,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004563498,"about_ca_topic_score_gemma":0.01014441,"domain_scores_codex":[0.9998161,0.00001579129,0.00002069182,0.00007073285,0.00005185586,0.00002478866],"domain_scores_gemma":[0.9996358,0.00006155834,0.00009460281,0.00006860698,0.00007890532,0.00006045192],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002885287,0.00004827726,0.002650009,0.0006648951,0.00007334557,0.0004510584,0.0002294773,0.00113807,0.9752908,0.0008540365,0.007685187,0.01062621],"study_design_scores_gemma":[0.0001669174,0.0004047949,0.1131064,0.0003597255,0.0003506366,0.001611952,0.0004731836,0.01938087,0.5885125,0.002561716,0.272893,0.0001783985],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.4282326,0.001471651,0.128369,0.001072,0.0004862569,0.0006432796,0.4228942,0.007021957,0.009809208],"genre_scores_gemma":[0.2145626,0.001709126,0.1834829,0.0004379906,0.00006178569,0.0007609841,0.5913732,0.002948576,0.004662926],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004563498,"threshold_uncertainty_score":0.01099509,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01059568366432206,"score_gpt":0.2391914030268443,"score_spread":0.2285957193625222,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}