{"id":"W4414524697","doi":"10.1021/acs.jproteome.5c00294","title":"Integrative Omics and AI-Driven Systems Biology: Multilayer Networks Decoding <i>Apis mellifera</i> Health and Resilience","year":2025,"lang":"en","type":"review","venue":"Journal of Proteome Research","topic":"Insect and Pesticide Research","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"University of British Columbia","keywords":"Systems biology; Resilience (materials science); Proteogenomics; Transformative learning; Omics; Proteomics; Honey bee","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005048364,0.0009999078,0.0009020263,0.001154699,0.0001812727,0.001041665,0.0007745078,0.001017417,0.002175793],"category_scores_gemma":[0.0006478859,0.0002855604,0.0005547762,0.001155815,0.0004562017,0.001384243,0.0007115704,0.001652257,0.001325711],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007173379,"about_ca_system_score_gemma":0.000760538,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001248006,"about_ca_topic_score_gemma":0.001865079,"domain_scores_codex":[0.9998926,0.00002093635,0.000009262855,0.00002507441,0.00004187096,0.00001022643],"domain_scores_gemma":[0.9997968,0.0001063073,0.00002135947,0.00001010888,0.00004957572,0.00001591386],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003716274,0.00003080682,0.0001726611,0.009765174,0.0001646151,0.0001230832,0.00005906852,0.002881668,0.004183164,0.03185429,0.02045053,0.9302777],"study_design_scores_gemma":[0.00001430196,0.00008654576,0.000812006,0.003013841,0.000163663,0.000481513,0.0000572157,0.002540862,0.002736575,0.02908564,0.9609611,0.0000468949],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0004235575,0.9893696,0.005600596,0.0008483797,0.0003818208,0.00001208112,0.00006744881,0.00006211056,0.003234407],"genre_scores_gemma":[0.003736627,0.9903155,0.003724882,0.0003734472,0.0002553342,0.00002005469,0.0001015664,0.00001154999,0.001461002],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002175793,"threshold_uncertainty_score":0.0072788,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1292003204319162,"score_gpt":0.4491353643951488,"score_spread":0.3199350439632326,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}