{"id":"W4414532407","doi":"10.1101/2025.09.19.677292","title":"Transcriptional cofactor AtSDR4L and its paralog DIG2 repress somatic embryogenesis during post-embryonic development in Arabidopsis","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Molecular Biology Research","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Somatic cell; Somatic embryogenesis; Transcription factor; Regulation of gene expression; Epigenetics; Arabidopsis; Embryogenesis; Transcription (linguistics); Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001141734,0.0004381824,0.0001537438,0.0002481144,0.0001518134,0.0002209453,0.0002994676,0.0001631897,0.001019912],"category_scores_gemma":[0.00007995729,0.0002094491,0.0001455371,0.0001107606,0.0001953002,0.0001451919,0.0002615738,0.0003640453,0.0005709904],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005882745,"about_ca_system_score_gemma":0.0002165703,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009132401,"about_ca_topic_score_gemma":0.00184722,"domain_scores_codex":[0.999879,0.0000160931,0.000009200353,0.00003464919,0.00003708719,0.00002404393],"domain_scores_gemma":[0.9998983,0.00001558739,0.00003453901,0.00001273264,0.000009151151,0.00002963087],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002451837,0.000004105348,0.00007879269,0.00001027183,0.000001085306,0.00001981061,0.000003434671,0.00002006984,0.9994616,0.00003820499,0.0000156591,0.0003223702],"study_design_scores_gemma":[0.00002005765,0.00006987392,0.007443111,0.000004165558,0.0000106435,0.0001569272,0.00002315052,0.001542067,0.9884007,0.000046566,0.002278192,0.000004592228],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.987718,0.001674207,0.006839878,0.0001013941,0.00003508541,0.00002549394,0.0008417937,0.0004587302,0.002305357],"genre_scores_gemma":[0.9911349,0.0003093955,0.002179835,0.0000563456,0.000006442087,0.0000206578,0.001144017,0.00005449741,0.005093825],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001019912,"threshold_uncertainty_score":0.004268229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01944622797825158,"score_gpt":0.2197985116212534,"score_spread":0.2003522836430018,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}