{"id":"W4414615571","doi":"10.46756/001c.143984","title":"PATH-SAFE Consortium Recommendations for Genomic Surveillance of Food-Borne Diseases Escherichia Coli and Listeria Monocytogenes","year":2025,"lang":"en","type":"article","venue":"FSA research and evidence.","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Listeria monocytogenes; Escherichia coli; Multilocus sequence typing; Serotype; Whole genome sequencing; Genome; Metadata; Workflow","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03371292,0.00190593,0.000780591,0.008393803,0.001849111,0.003508793,0.005482133,0.008378634,0.01223756],"category_scores_gemma":[0.03447272,0.0009258859,0.001858508,0.005243976,0.001921982,0.001816334,0.004072715,0.00471765,0.01049859],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002750331,"about_ca_system_score_gemma":0.03499056,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03119024,"about_ca_topic_score_gemma":0.03372557,"domain_scores_codex":[0.9750764,0.01053912,0.002495394,0.001205326,0.008484458,0.002199279],"domain_scores_gemma":[0.9193453,0.01343712,0.006773159,0.007165879,0.04491535,0.008363193],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009811301,0.00106393,0.02773879,0.002644206,0.0001306147,0.001508176,0.001115374,0.003080316,0.03790698,0.0093477,0.7384294,0.1760534],"study_design_scores_gemma":[0.0002878963,0.0008504018,0.03128282,0.002925978,0.0002221339,0.001007442,0.001820583,0.001778559,0.02078154,0.0074439,0.9314088,0.0001898176],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"other","genre_scores_codex":[0.03711549,0.01150148,0.3141755,0.2354998,0.0106083,0.02881116,0.09681262,0.01675023,0.2487255],"genre_scores_gemma":[0.05677095,0.008053874,0.6241806,0.09855754,0.001259344,0.01941507,0.1046043,0.00184475,0.08531354],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.03371292,"threshold_uncertainty_score":0.1782931,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1704751132301465,"score_gpt":0.4152702807477279,"score_spread":0.2447951675175813,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}