{"id":"W4414640181","doi":"10.1111/ede.70018","title":"Conserved Gene Expression Plasticity in Development Is More Pervasive Than Expression Divergence Between Species of <i>Caenorhabditis</i> Nematodes","year":2025,"lang":"en","type":"article","venue":"Evolution & Development","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"","keywords":"Transcriptome; Gene; Gene expression; Caenorhabditis elegans; Caenorhabditis; Regulation of gene expression; Gene regulatory network; Human evolutionary genetics; Gene expression profiling","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001912451,0.0002835236,0.0003233341,0.0001524695,0.0002191593,0.00001926012,0.0003421397,0.0002120408,0.00005540268],"category_scores_gemma":[0.00008504864,0.0002828534,0.00006717521,0.0001787011,0.0001365423,0.00001169433,0.0004807235,0.0001234998,0.00001142695],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001455936,"about_ca_system_score_gemma":0.0005980942,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003852602,"about_ca_topic_score_gemma":0.00008789914,"domain_scores_codex":[0.9980293,0.00008080314,0.0006428052,0.0005428234,0.0003461251,0.0003581234],"domain_scores_gemma":[0.9991969,0.00002969225,0.0002002648,0.0002830226,0.0001957313,0.00009441307],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004294356,0.00009454472,0.3309985,0.00009060487,0.00003936751,0.00000187979,0.002439746,0.0002314234,0.6644272,0.00001696324,0.001449668,0.0001671562],"study_design_scores_gemma":[0.0003636479,0.00002013017,0.3969653,0.0001773174,0.000008589933,8.608215e-7,0.0003200624,0.00001047644,0.5994963,0.00004483305,0.002408738,0.0001837859],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9485285,0.000594289,0.05004566,0.0001053089,0.000199228,0.0003018917,0.00002483943,0.00001867128,0.0001815584],"genre_scores_gemma":[0.9769554,0.0001635337,0.02176543,0.000114935,0.00005284559,0.00004907606,0.0001492617,0.00001683009,0.0007327531],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06596677,"threshold_uncertainty_score":0.9999624,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01333901663898286,"score_gpt":0.2360284624895524,"score_spread":0.2226894458505695,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}