{"id":"W4414702824","doi":"10.3390/bacteria4040050","title":"Beyond Genes: Non-Canonical Mechanisms Driving Antimicrobial Resistance in Bacteria","year":2025,"lang":"en","type":"article","venue":"Bacteria","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Context (archaeology); Antibiotic resistance; Efflux; Variety (cybernetics); Resistance (ecology); Drug resistance; Gene; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002909536,0.000330742,0.0003896054,0.0001236481,0.0001027771,0.0001224895,0.0005153127,0.0003661496,0.0001179549],"category_scores_gemma":[0.00009679089,0.0003529504,0.000127693,0.0002547872,0.0001308631,0.00001540928,0.0003092733,0.0001534714,0.00003362186],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007622856,"about_ca_system_score_gemma":0.0003054639,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001552501,"about_ca_topic_score_gemma":0.0007766152,"domain_scores_codex":[0.9978992,0.0001129551,0.0005548421,0.000761243,0.0001156867,0.0005560436],"domain_scores_gemma":[0.9989083,0.00002497867,0.0001418067,0.0007642539,0.00007370664,0.00008699163],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002302863,0.00007927573,0.01096986,0.00006680378,0.00004171618,0.00002117114,0.00002415818,0.000001184456,0.9834847,0.001256382,0.003588959,0.0002354646],"study_design_scores_gemma":[0.001290746,0.00006719546,0.2845268,0.0003424193,0.00002765609,0.00001033987,0.00004816667,0.000005330091,0.6832885,0.0007017274,0.02914685,0.000544347],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9891821,0.00015651,0.003079808,0.0002273604,0.001334604,0.0003323991,0.00003783244,0.00002614715,0.005623279],"genre_scores_gemma":[0.9738559,0.0002090784,0.02094597,0.0004401529,0.0002123397,0.00002000255,0.0001849748,0.00004631976,0.004085246],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3001963,"threshold_uncertainty_score":0.9998922,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004886727350137777,"score_gpt":0.2381803900133259,"score_spread":0.2332936626631881,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}