{"id":"W4414822456","doi":"10.1111/mec.70107","title":"Large Haplotypes Linked to Climate and Life History Variation in Divergent Lineages of Atlantic Salmon ( <scp> <i>Salmo salar</i> </scp> )","year":2025,"lang":"en","type":"article","venue":"Molecular Ecology","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University; Fisheries and Oceans Canada","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Haplotype; Introgression; Local adaptation; Linkage disequilibrium; Adaptation (eye); Demographic history; Genetic variation; Haplotype estimation; Allele","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002285666,0.0001097978,0.0002029883,0.0007276456,0.0003113799,0.0002337051,0.0001348244,0.0001885025,0.001093777],"category_scores_gemma":[0.0004215098,0.00009845233,0.0003243106,0.0007548933,0.0003038192,0.00009753247,0.0003975059,0.0002840277,0.0002441641],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002219315,"about_ca_system_score_gemma":0.0002709815,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004217512,"about_ca_topic_score_gemma":0.009593681,"domain_scores_codex":[0.9998528,0.00001695073,0.00001686405,0.00006489272,0.00002272104,0.00002576847],"domain_scores_gemma":[0.9995465,0.00009335428,0.000180961,0.00002890263,0.0000642999,0.00008586718],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008495516,0.00006227458,0.530401,0.0001660019,0.0002748333,0.0004871821,0.001379094,0.0003091778,0.4516348,0.0002403459,0.000270106,0.01392576],"study_design_scores_gemma":[0.00001763815,0.0000875898,0.997124,0.00001074496,0.00004232186,0.0002009364,0.0001814264,0.0002313466,0.001577684,0.00006070577,0.0004590647,0.000006628402],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988673,0.00006277077,0.0002883641,0.00001106775,0.0000025521,0.000006278007,0.000500929,0.000007547207,0.0002532633],"genre_scores_gemma":[0.9974661,0.00003047482,0.000579876,0.00004042683,0.000003669781,0.00002130458,0.001653138,0.000006809736,0.0001982249],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004217512,"threshold_uncertainty_score":0.008385897,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006989355959600055,"score_gpt":0.2181156298649012,"score_spread":0.2111262739053012,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}