{"id":"W4414830649","doi":"10.1093/jas/skaf300.052","title":"386 Decoding poultry threats: Unveiling sequencing types, serogroups, and antimicrobial resistance of avian pathogenic Escherichia coli in Alberta, Canada.","year":2025,"lang":"en","type":"article","venue":"Journal of Animal Science","topic":"Animal Disease Management and Epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Agriculture and Agri-Food Canada; Université de Montréal; University of Calgary","funders":"","keywords":"Pathogenic Escherichia coli; Phylogenetic tree; Virulence; Escherichia coli; Genotype; Flock; Antibiotic resistance; Phylogenetics; Antimicrobial","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003775787,0.0003946369,0.0001799454,0.001714644,0.001429287,0.0007791326,0.0004338461,0.0003008695,0.0006700248],"category_scores_gemma":[0.0005132647,0.000195406,0.0002100819,0.001784724,0.0004378237,0.0002083979,0.000379286,0.0003220691,0.0001612349],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.008983535,"about_ca_system_score_gemma":0.009923743,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9642636,"about_ca_topic_score_gemma":0.9805686,"domain_scores_codex":[0.9996709,0.00001662191,0.0000131427,0.00005382758,0.000130122,0.0001154692],"domain_scores_gemma":[0.999128,0.00003309878,0.0001473616,0.00001353114,0.0005082358,0.0001698014],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001666085,0.00003642292,0.9793572,0.00005818929,0.0000188226,0.0005929972,0.0008465249,0.0002540259,0.007441704,0.00005718573,0.0006588798,0.01051129],"study_design_scores_gemma":[0.000001703552,0.00002609517,0.9968646,0.00001432391,0.000008146733,0.0001129759,0.001343852,0.00022994,0.0003340149,0.00001026471,0.001050605,0.000003304716],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9951717,0.0008565267,0.0002341051,0.0001826871,0.00001080597,0.00003488054,0.001610195,0.000013031,0.001886061],"genre_scores_gemma":[0.994233,0.0007310637,0.0009368906,0.0001157664,0.000006571255,0.000008929068,0.001995146,0.000005862084,0.001966855],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03573644,"threshold_uncertainty_score":0.07189375,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01922034927578945,"score_gpt":0.2464617220605957,"score_spread":0.2272413727848062,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}