{"id":"W4414866994","doi":"10.1093/genetics/iyaf218","title":"The phenotypic variation of <i>widefins</i> medaka is due to the insertion of a giant transposon containing a viral genome within the hoxca cluster","year":2025,"lang":"en","type":"article","venue":"Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Vicerrectoría de Investigación y Estudios de Posgrado, Benemérita Universidad Autónoma de Puebla; Japan Society for the Promotion of Science; National Institute of Genetics; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Hox gene; Transposable element; Phenotype; Epigenetics; Gene; Genome; Homeotic gene; Genetic variation; Mutant","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008390726,0.0005492305,0.0002230141,0.0006194253,0.0002593674,0.0002615771,0.0003224328,0.0004444422,0.002422401],"category_scores_gemma":[0.0001244538,0.0003246642,0.000379627,0.000192115,0.0006189655,0.0001397848,0.0005914479,0.0008353291,0.0004494478],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003369817,"about_ca_system_score_gemma":0.0001698944,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002056499,"about_ca_topic_score_gemma":0.005014065,"domain_scores_codex":[0.9998026,0.00001419001,0.00002152119,0.00008106722,0.00004437036,0.00003616427],"domain_scores_gemma":[0.9997243,0.00003969096,0.0001300535,0.00002917721,0.00001302524,0.00006381384],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001608267,0.000004770611,0.0003243897,0.00001070557,0.000003295681,0.00005406448,0.000009747641,0.00001687434,0.9991683,0.00002521587,0.00001493663,0.0003516131],"study_design_scores_gemma":[0.00001891981,0.0003217442,0.135254,0.00001877861,0.00005495279,0.001613617,0.0001201047,0.0009054228,0.8584018,0.00008706681,0.003167311,0.00003631513],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950504,0.0002163071,0.002297649,0.00006225535,0.00001848965,0.0000260117,0.0009426954,0.0002380422,0.001148242],"genre_scores_gemma":[0.9916136,0.0001401839,0.002825604,0.00007407164,0.000007498913,0.00004684372,0.0008912695,0.00009763627,0.004303336],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002422401,"threshold_uncertainty_score":0.008103728,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01116158182060776,"score_gpt":0.2071693040816192,"score_spread":0.1960077222610115,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}