{"id":"W4414866994","doi":"10.1093/genetics/iyaf218","title":"The phenotypic variation of <i>widefins</i> medaka is due to the insertion of a giant transposon containing a viral genome within the hoxca cluster","year":2025,"lang":"en","type":"article","venue":"Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Vicerrectoría de Investigación y Estudios de Posgrado, Benemérita Universidad Autónoma de Puebla; Japan Society for the Promotion of Science; National Institute of Genetics; Ministry of Education, Culture, Sports, Science and Technology","keywords":"Hox gene; Transposable element; Phenotype; Epigenetics; Gene; Genome; Homeotic gene; Genetic variation; Mutant","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003681736,0.00009017428,0.0001184533,0.000008460148,0.0003334211,0.00003428707,0.000339304,0.00005705702,0.0000278286],"category_scores_gemma":[0.00004784885,0.00002543991,0.00007664501,0.000357032,0.00006335487,0.00001620259,0.00006061533,0.00007820348,0.000004489319],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001369794,"about_ca_system_score_gemma":0.00002995028,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001912914,"about_ca_topic_score_gemma":0.003272456,"domain_scores_codex":[0.999088,0.0001248715,0.0003253472,0.0001417714,0.000180202,0.0001397485],"domain_scores_gemma":[0.9993395,0.0002746174,0.0001311607,0.0001244414,0.0001062116,0.00002412656],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002897125,0.0001317887,0.002957056,0.00002509513,0.0001469956,4.692009e-7,0.01417715,0.004130205,0.9010844,0.01505063,0.0001767814,0.06182978],"study_design_scores_gemma":[0.0002891483,0.0004566285,0.9564653,0.00003821254,0.0001040681,0.000002914963,0.001107577,0.003334993,0.01341215,0.008853471,0.01580698,0.0001285326],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.974645,0.0005336286,0.0006939233,0.0232215,0.0001650273,0.0004294206,0.00006178777,0.000008675454,0.0002410818],"genre_scores_gemma":[0.9979602,0.00005515063,0.0003057832,0.001422223,0.00008533414,0.00002807319,0.00001078802,8.889207e-7,0.0001315312],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9535083,"threshold_uncertainty_score":0.2564439,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01116158182060776,"score_gpt":0.2071693040816192,"score_spread":0.1960077222610115,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}