{"id":"W4414973105","doi":"10.1101/2025.10.08.681227","title":"Small- and large-scale patches shape benthic microbial community structure and function in streams at the subcontinental scale","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo; McGill University; McGill Genome Centre","funders":"Battelle; National Science Foundation","keywords":"Biogeochemical cycle; STREAMS; Microbial population biology; Benthic zone; Community structure; Spatial ecology; Habitat; Microbial ecology; Water quality","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003537475,0.000171529,0.0002697748,0.001183987,0.0004132217,0.0007972597,0.0001721471,0.0001483911,0.0009121851],"category_scores_gemma":[0.0009516803,0.0001026734,0.0002995704,0.0013248,0.0002910083,0.0004122731,0.0008501593,0.0002097779,0.0001293068],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002403136,"about_ca_system_score_gemma":0.000262795,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01589678,"about_ca_topic_score_gemma":0.02435867,"domain_scores_codex":[0.9997947,0.00003912706,0.00001969903,0.0000852267,0.00002934743,0.00003205241],"domain_scores_gemma":[0.999483,0.0001173029,0.0001588024,0.00005211175,0.0001174712,0.00007126026],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003639482,0.00001577957,0.9893215,0.00002856776,0.00007993893,0.00003626029,0.000346453,0.0002951814,0.003212432,0.00006020708,0.0002377642,0.006329585],"study_design_scores_gemma":[0.000001388414,0.000005696695,0.9986334,0.000006845173,0.00001653975,0.00001583356,0.0003172957,0.0005240279,0.0001539965,0.00006954306,0.0002528894,0.000002627871],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983583,0.0001042733,0.0002354578,0.00002030174,0.000001805517,0.000002912305,0.0009726476,0.000007259155,0.0002971161],"genre_scores_gemma":[0.9983085,0.00009416884,0.0003143557,0.00002087632,0.000003169136,0.000005831636,0.001143627,0.000004890121,0.0001044629],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01589678,"threshold_uncertainty_score":0.03160846,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009836786432639563,"score_gpt":0.1938520082417559,"score_spread":0.1840152218091164,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}