{"id":"W4414980355","doi":"10.1242/jcs.264154","title":"Toggle-Untoggle – a cell segmentation tool with an interactive user verification interface","year":2025,"lang":"en","type":"article","venue":"Journal of Cell Science","topic":"Cell Image Analysis Techniques","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; University of Toronto; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Segmentation; Graphical user interface; Merge (version control); Limiting; Flexibility (engineering); Interface (matter); Image segmentation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004432116,0.00008056585,0.00009543807,0.0001507897,0.00007123301,0.00009561553,0.0003607975,0.00003439464,0.00001511276],"category_scores_gemma":[0.00003744361,0.00006332557,0.00004367657,0.0003242595,0.0001294027,0.00007535754,0.0000601507,0.00009501455,0.000002048838],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006024224,"about_ca_system_score_gemma":0.0002284872,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000008166675,"about_ca_topic_score_gemma":0.0000109987,"domain_scores_codex":[0.9992213,0.00003424681,0.0002206402,0.0001988686,0.0002081658,0.0001168349],"domain_scores_gemma":[0.9990149,0.000009184094,0.0002741858,0.0002388853,0.0004162336,0.00004661928],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001221744,0.0001054173,0.0003648625,0.000006253711,0.000008047304,0.000001613821,0.0001110062,0.00009757211,0.9964252,0.000004122207,0.0008019786,0.001951714],"study_design_scores_gemma":[0.0002464112,0.0005284454,0.0007151078,0.00001930198,0.00002822225,0.000007854561,0.0004924511,0.0002308703,0.9942167,0.00002077216,0.003419825,0.00007408046],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8799174,0.00009059357,0.1165564,0.00005271133,0.00003862951,0.00007938684,3.856032e-7,0.000004409967,0.003260042],"genre_scores_gemma":[0.9744611,0.00006588901,0.0241373,0.0001330418,0.00003188061,0.000002666761,0.000002696448,0.000004685542,0.001160788],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09454362,"threshold_uncertainty_score":0.2582342,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004195188705570758,"score_gpt":0.2877712329792547,"score_spread":0.2835760442736839,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}