{"id":"W4415157048","doi":"10.1007/978-1-0716-4832-2_3","title":"Serological Proteome Analysis for Antigen Identification","year":2025,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"National Research Council Canada","funders":"","keywords":"Proteome; Serology; Antigen; Immune system; Identification (biology); Antibody; Blot; Proteomics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005505478,0.0009670463,0.0005018598,0.001170876,0.0004468997,0.0006838767,0.0005313013,0.0004516291,0.002223888],"category_scores_gemma":[0.0007287786,0.000309968,0.0006535268,0.0009206925,0.0002673046,0.0005427408,0.00059421,0.001151125,0.002255185],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002466857,"about_ca_system_score_gemma":0.0002996978,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005655093,"about_ca_topic_score_gemma":0.0007222474,"domain_scores_codex":[0.999482,0.0001022873,0.00004694203,0.00009973755,0.0001708056,0.00009820522],"domain_scores_gemma":[0.9995636,0.00009498116,0.00004491786,0.00007078536,0.0001806297,0.00004497486],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004163655,0.00002852374,0.0003636718,0.00004729734,0.000008324483,0.00001541812,0.00001091829,0.00002084819,0.9958454,0.0001528107,0.0001227425,0.003342477],"study_design_scores_gemma":[0.000006772053,0.0001835911,0.00694824,0.00001340488,0.00005608041,0.0003126742,0.00004937171,0.003177952,0.9832982,0.000360281,0.005581726,0.00001167995],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"methods","genre_scores_codex":[0.6169568,0.004603855,0.3574945,0.0008671292,0.000496434,0.0004955705,0.005670558,0.001610846,0.01180437],"genre_scores_gemma":[0.8040108,0.003285661,0.1709632,0.000762907,0.0001566978,0.0004344302,0.0107786,0.0002787984,0.0093288],"genre_candidate":"methods","genre_consensus":null,"teacher_disagreement_score":0.002223888,"threshold_uncertainty_score":0.007439613,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03026184364627193,"score_gpt":0.4434892934021312,"score_spread":0.4132274497558592,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}