{"id":"W4415234710","doi":"10.1101/2025.10.15.682593","title":"Integrated Metabolic Complex Genetic Interaction Network of Chromosome 4p Loss in Basal Breast Cancer","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Université de Montréal; Concordia University","funders":"","keywords":"Breast cancer; Carcinogenesis; Cancer; Basal (medicine); Gene; Cancer cell; Chromosome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001011923,0.0002300845,0.0002231805,0.0006901615,0.0001915167,0.0003619581,0.0001832479,0.000184346,0.002442462],"category_scores_gemma":[0.0002470013,0.0001336701,0.0002957286,0.0006842656,0.0001173395,0.0001379555,0.0003226576,0.0002391164,0.0003043007],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004185109,"about_ca_system_score_gemma":0.0002983271,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002521834,"about_ca_topic_score_gemma":0.002407365,"domain_scores_codex":[0.9999028,0.0000136475,0.000003269553,0.0000343929,0.00002976463,0.00001607594],"domain_scores_gemma":[0.9999133,0.00002016699,0.00003550774,0.000008111297,0.00001049476,0.00001241206],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0008245204,0.00010589,0.07223798,0.0003789833,0.0002622528,0.001324491,0.0001008844,0.03138718,0.8512529,0.003817248,0.002857496,0.03545034],"study_design_scores_gemma":[0.00008164747,0.0002474227,0.5533351,0.0000599192,0.0004474612,0.002305819,0.0002645021,0.1899195,0.2206872,0.0123795,0.02020395,0.00006779576],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9631764,0.0007873847,0.02365612,0.0002677189,0.0000164029,0.0000307007,0.008592097,0.0006314071,0.002841718],"genre_scores_gemma":[0.980717,0.000414177,0.008218131,0.00004321403,0.000004655376,0.00004438982,0.008571615,0.00004610145,0.00194068],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002521834,"threshold_uncertainty_score":0.008170784,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01051308104560572,"score_gpt":0.2323705223599376,"score_spread":0.2218574413143319,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}