{"id":"W4415270455","doi":"10.17615/0ybx-yb10","title":"A consensus protocol for functional connectivity analysis in the rat brain","year":2025,"lang":"en","type":"article","venue":"UNC Libraries","topic":"Functional Brain Connectivity Studies","field":"Neuroscience","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Division of Materials Research; National Health and Medical Research Council; Medical Research Council; Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Simons Initiative for the Developing Brain; Innosuisse - Schweizerische Agentur für Innovationsförderung; Eurostars; Vlaamse regering; Directorate for Biological Sciences; Centre Hospitalier Universitaire Vaudois; Centre d'Imagerie BioMédicale; Université de Genève; Canadian Institutes of Health Research; Fonds Wetenschappelijk Onderzoek; National Natural Science Foundation of China; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Ministry of Education, Culture, Sports, Science and Technology; Dirección General de Asuntos del Personal Académico, Universidad Nacional Autónoma de México; McGill University; Deutsche Forschungsgemeinschaft; Horizon 2020 Framework Programme; Universiteit Utrecht; Fondation Brain Canada; European Commission; King's College London; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Werner Siemens-Stiftung; Science Foundation Ireland; National Science Foundation; Compute Canada; Versus Arthritis; Australian Government; Agence Nationale de la Recherche; Wellcome Trust; École Polytechnique Fédérale de Lausanne; Fundação para a Ciência e a Tecnologia; Université de Lausanne; National Alliance for Research on Schizophrenia and Depression; National Imaging Facility; Centro de Investigación Biomédica en Red en Bioingeniería, Biomateriales y Nanomedicina; ShanghaiTech University; Autism Speaks","keywords":"Protocol (science); Functional connectivity; Functional magnetic resonance imaging; Pipeline (software); Neuroimaging; Functional neuroimaging; Interoperability; Modalities","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01097359,0.004076634,0.002933477,0.009176552,0.006286779,0.00295843,0.006591589,0.004916402,0.1225117],"category_scores_gemma":[0.01966914,0.004775514,0.004590143,0.005324412,0.00283012,0.002131589,0.003475974,0.007718625,0.05260439],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002081221,"about_ca_system_score_gemma":0.01057103,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005771389,"about_ca_topic_score_gemma":0.01830571,"domain_scores_codex":[0.9921768,0.002632705,0.001640672,0.001301766,0.001389931,0.0008581469],"domain_scores_gemma":[0.9789979,0.005933144,0.0008437464,0.007273334,0.006067832,0.0008840236],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002855814,0.001228393,0.001281128,0.009338651,0.0009631885,0.003109439,0.002898735,0.008441937,0.290047,0.05731084,0.344339,0.2781859],"study_design_scores_gemma":[0.001833886,0.001290058,0.006698779,0.003113187,0.0007108654,0.004928263,0.0006848972,0.0185471,0.1824591,0.04652982,0.7323876,0.0008164764],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.004434723,0.000740319,0.9299566,0.0005917844,0.0007144262,0.01814369,0.0151542,0.01629107,0.01397319],"genre_scores_gemma":[0.006412432,0.0005972647,0.8734392,0.0004345409,0.0001111151,0.084803,0.01202415,0.004816967,0.01736137],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.1225117,"threshold_uncertainty_score":0.4098426,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06925990590463611,"score_gpt":0.3170131829267488,"score_spread":0.2477532770221127,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}