{"id":"W4415288596","doi":"10.1139/gen-2025-0052","title":"<i>Cenchrus purpureus</i> and <i>Cenchrus americanus</i> repeatome provide chromosomal markers to distinguish subgenomes","year":2025,"lang":"en","type":"article","venue":"Genome","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Coordenação de Aperfeiçoamento de Pessoal de Nível Superior","keywords":"Genome; Repeated sequence; Satellite DNA; Ploidy; DNA; DNA sequencing; Gene; Interspersed repeat","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007702467,0.0002840512,0.000145225,0.001153078,0.0002676701,0.0003150228,0.0002655443,0.0002695108,0.001743986],"category_scores_gemma":[0.0001412432,0.0001639447,0.0001957607,0.0007876558,0.0001533727,0.0002718792,0.0002495521,0.0002557976,0.00058802],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001904077,"about_ca_system_score_gemma":0.0001277513,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002121591,"about_ca_topic_score_gemma":0.003052158,"domain_scores_codex":[0.9998924,0.00001003505,0.000004399945,0.00005145698,0.00002045211,0.00002124719],"domain_scores_gemma":[0.9998647,0.00002395577,0.00005389653,0.00001522829,0.00002183058,0.000020455],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000100236,0.00001588376,0.006464743,0.00004971104,0.00001451869,0.00004661955,0.00008285692,0.00008468424,0.9838885,0.0001422385,0.00004693522,0.009062929],"study_design_scores_gemma":[0.00001576968,0.0002501783,0.6261059,0.00003072784,0.0000956271,0.001374971,0.000540101,0.003909459,0.3519109,0.0005150434,0.01521727,0.00003409098],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9905204,0.0006329183,0.005319683,0.00003390093,0.000005978302,0.00001967792,0.001152471,0.000126194,0.002188697],"genre_scores_gemma":[0.9848087,0.0003374338,0.008751336,0.00004306275,0.000008674133,0.00003520731,0.003482577,0.00003586407,0.002497153],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002121591,"threshold_uncertainty_score":0.005834162,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006533019424703452,"score_gpt":0.204650094699146,"score_spread":0.1981170752744425,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}