{"id":"W4415439426","doi":"10.1101/2025.10.21.683682","title":"The Genomic Architecture of Local Adaptation in Two Connected Populations of Three-Spined Stickleback","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Silkworms and Sericulture Research","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Recombination; Local adaptation; Adaptation (eye); Ecotype; Stickleback; Range (aeronautics); Allele; Genetic architecture; Structural variation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001405285,0.00009737486,0.0002317363,0.001146774,0.0003908484,0.0004505863,0.0002796742,0.0002655111,0.000634153],"category_scores_gemma":[0.0003693429,0.0001321221,0.0002310888,0.0006066212,0.0005144196,0.0001331186,0.0004764489,0.0002484996,0.00007759957],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003111354,"about_ca_system_score_gemma":0.0001305107,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004802644,"about_ca_topic_score_gemma":0.008417152,"domain_scores_codex":[0.9998895,0.00001102806,0.000008222084,0.00005979147,0.00001434328,0.00001719935],"domain_scores_gemma":[0.9996835,0.00005762606,0.0001215021,0.00003291538,0.00004275496,0.00006167534],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006689943,0.00008357092,0.5699434,0.00009831128,0.0002436964,0.0004465674,0.002692186,0.00206408,0.412241,0.0005536904,0.0001070996,0.0108575],"study_design_scores_gemma":[0.000006675598,0.00005821091,0.9965456,0.000006192576,0.000024705,0.0001158199,0.0003104646,0.001314397,0.001306741,0.0001497365,0.000153908,0.000007509779],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997393,0.00001287082,0.0001386462,0.000001557699,3.055555e-7,0.000001263458,0.00003137849,0.000003103029,0.00007134022],"genre_scores_gemma":[0.9996417,0.000005880118,0.0001664829,0.000005782356,5.847512e-7,0.000003121382,0.000121217,0.000001889956,0.00005339073],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004802644,"threshold_uncertainty_score":0.009549379,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03044917587938263,"score_gpt":0.2506997084847478,"score_spread":0.2202505326053652,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}